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  1. IGB
  2. IGBF-2686

Add creation of BioViz role and DynomoDB needed by bar.html

        Details

        • Type: New Feature
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          1
        • Epic Link:
        • Sprint:
          Fall 7 Dec 14 - Dec 23, Winter 1 Dec 28 - Jan 8, Winter 2 Jan 11 - Jan 22, Winter 3 Jan 25 - Feb 5, Winter 4 Feb 8 - Feb 19, Winter 5 Feb 22 - Mar 5, Winter 6 Mar 8 - Mar 19, Spring 1 2021 Mar 22 - Apr 2, Spring 2 2021 Apr 5 - Apr 16

          Description

          The CGI script "geneIdLookup.py" in cgi-bin of the bioviz code base connects to a small dynamodb table during operation of bar.html code.

          Add provisioning and configuration of the dynamodb resource to the bioviz playbooks.

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              ann.loraine Ann Loraine added a comment - - edited

              How to get a single file out of a subversion repository without checking out an entire directory:

              svn export https://svn.bioviz.org/repos/genomes/quickload/A_thaliana_Jun_2009/Araport11.bed.gz --username=guest --password=guest
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              ann.loraine Ann Loraine added a comment - - edited How to get a single file out of a subversion repository without checking out an entire directory: svn export https: //svn.bioviz.org/repos/genomes/quickload/A_thaliana_Jun_2009/Araport11.bed.gz --username=guest --password=guest
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              ann.loraine Ann Loraine added a comment -

              Also will enable AWS and other variables to be passed as command line options. This will enable the script to be run with no editing required.

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              ann.loraine Ann Loraine added a comment - Also will enable AWS and other variables to be passed as command line options. This will enable the script to be run with no editing required.
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              ann.loraine Ann Loraine added a comment -

              The loading script appears to search through the entire "results" list each time it reads a line. From start to finish.
              Fixing this.

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              ann.loraine Ann Loraine added a comment - The loading script appears to search through the entire "results" list each time it reads a line. From start to finish. Fixing this.
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              ann.loraine Ann Loraine added a comment -

              Making some changes / updates to the code:

              • Define dynamo_db_table_name to be Araport11
              • Add role to aws.yml
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              ann.loraine Ann Loraine added a comment - Making some changes / updates to the code: Define dynamo_db_table_name to be Araport11 Add role to aws.yml
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              ann.loraine Ann Loraine added a comment -

              Merged.

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              ann.loraine Ann Loraine added a comment - Merged.
              31 older comments

                People

                • Assignee:
                  ann.loraine Ann Loraine
                  Reporter:
                  ann.loraine Ann Loraine
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                  Dates

                  • Created:
                    Updated:
                    Resolved: