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  1. IGB
  2. IGBF-2803

Add F albicollis genome to IGB

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        • Story Points:
          1
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        • Sprint:
          Winter 5 Feb 22 - Mar 5, Winter 6 Mar 8 - Mar 19, Spring 1 2021 Mar 22 - Apr 2

          Description

          Situation: A user has asked for the Ficedula albicollis (collared flycatcher) genome to be added to IGB.

          Task: Add the genome to IGB.

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              inaylor Irvin Naylor (Inactive) added a comment -

              Can confirm, the species and genome versions are showing up correctly and are selectable in the version drop-down of the latest master branch installer.

              Species: Ficedula albicollis - collared flycatcher
              Genome Version: F_albicollis_Jun_2013

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              inaylor Irvin Naylor (Inactive) added a comment - Can confirm, the species and genome versions are showing up correctly and are selectable in the version drop-down of the latest master branch installer. Species: Ficedula albicollis - collared flycatcher Genome Version: F_albicollis_Jun_2013
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              ann.loraine Ann Loraine added a comment - - edited

              Merged. Master branch installers are built. New data are deployed on

              • igbquickload.org/quickload
              • lorainelab-quickload.scidas.org/quickload
              • quickload.bioviz.org/svn

              To test:

              • Launch IGB 9.1.6.
              • Confirm that species and genome version now appear in the species and genome version menus in IGB.
              • See PR and subversion repository viewcvs the species and genome version names and record them here.
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              ann.loraine Ann Loraine added a comment - - edited Merged. Master branch installers are built. New data are deployed on igbquickload.org/quickload lorainelab-quickload.scidas.org/quickload quickload.bioviz.org/svn To test: Launch IGB 9.1.6. Confirm that species and genome version now appear in the species and genome version menus in IGB. See PR and subversion repository viewcvs the species and genome version names and record them here.
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              nfreese Nowlan Freese added a comment -

              Sequence and annotation files have been added to svn repository.

              Pull request with changes to species.txt in IGB here: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/870/igbf-2803-add-ficedula-albicollis-to

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              nfreese Nowlan Freese added a comment - Sequence and annotation files have been added to svn repository. Pull request with changes to species.txt in IGB here: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/870/igbf-2803-add-ficedula-albicollis-to

                People

                • Assignee:
                  inaylor Irvin Naylor (Inactive)
                  Reporter:
                  nfreese Nowlan Freese
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                    Updated:
                    Resolved: