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  1. IGB
  2. IGBF-2803

Add F albicollis genome to IGB

        Details

        • Story Points:
          1
        • Epic Link:
        • Sprint:
          Winter 5 Feb 22 - Mar 5, Winter 6 Mar 8 - Mar 19, Spring 1 2021 Mar 22 - Apr 2

          Description

          Situation: A user has asked for the Ficedula albicollis (collared flycatcher) genome to be added to IGB.

          Task: Add the genome to IGB.

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              nfreese Nowlan Freese created issue -
              nfreese Nowlan Freese made changes -
              Field Original Value New Value
              Epic Link IGBF-1765 [ 17855 ]
              nfreese Nowlan Freese made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              nfreese Nowlan Freese made changes -
              Status In Progress [ 3 ] To-Do [ 10305 ]
              nfreese Nowlan Freese made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              nfreese Nowlan Freese made changes -
              Status In Progress [ 3 ] To-Do [ 10305 ]
              nfreese Nowlan Freese made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              nfreese Nowlan Freese made changes -
              Status In Progress [ 3 ] To-Do [ 10305 ]
              ann.loraine Ann Loraine made changes -
              Sprint Winter 5 Feb 22 - Mar 5 [ 115 ] Winter 5 Feb 22 - Mar 5, Winter 6 Mar 8 - Mar 19 [ 115, 116 ]
              ann.loraine Ann Loraine made changes -
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              ann.loraine Ann Loraine made changes -
              Sprint Winter 5 Feb 22 - Mar 5, Winter 6 Mar 8 - Mar 19 [ 115, 116 ] Winter 5 Feb 22 - Mar 5, Winter 6 Mar 8 - Mar 19, Spring 1 Mar 22 - Apr 2 [ 115, 116, 117 ]
              ann.loraine Ann Loraine made changes -
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              nfreese Nowlan Freese added a comment -

              Sequence and annotation files have been added to svn repository.

              Pull request with changes to species.txt in IGB here: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/870/igbf-2803-add-ficedula-albicollis-to

              Show
              nfreese Nowlan Freese added a comment - Sequence and annotation files have been added to svn repository. Pull request with changes to species.txt in IGB here: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/870/igbf-2803-add-ficedula-albicollis-to
              nfreese Nowlan Freese made changes -
              Assignee Nowlan Freese [ nfreese ]
              nfreese Nowlan Freese made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              nfreese Nowlan Freese made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              nfreese Nowlan Freese made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              nfreese Nowlan Freese made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              nfreese Nowlan Freese made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
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              ann.loraine Ann Loraine added a comment - - edited

              Merged. Master branch installers are built. New data are deployed on

              • igbquickload.org/quickload
              • lorainelab-quickload.scidas.org/quickload
              • quickload.bioviz.org/svn

              To test:

              • Launch IGB 9.1.6.
              • Confirm that species and genome version now appear in the species and genome version menus in IGB.
              • See PR and subversion repository viewcvs the species and genome version names and record them here.
              Show
              ann.loraine Ann Loraine added a comment - - edited Merged. Master branch installers are built. New data are deployed on igbquickload.org/quickload lorainelab-quickload.scidas.org/quickload quickload.bioviz.org/svn To test: Launch IGB 9.1.6. Confirm that species and genome version now appear in the species and genome version menus in IGB. See PR and subversion repository viewcvs the species and genome version names and record them here.
              ann.loraine Ann Loraine made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              ann.loraine Ann Loraine made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              ann.loraine Ann Loraine made changes -
              Assignee Irvin Naylor [ inaylor ]
              inaylor Irvin Naylor (Inactive) made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
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              inaylor Irvin Naylor (Inactive) added a comment -

              Can confirm, the species and genome versions are showing up correctly and are selectable in the version drop-down of the latest master branch installer.

              Species: Ficedula albicollis - collared flycatcher
              Genome Version: F_albicollis_Jun_2013

              Show
              inaylor Irvin Naylor (Inactive) added a comment - Can confirm, the species and genome versions are showing up correctly and are selectable in the version drop-down of the latest master branch installer. Species: Ficedula albicollis - collared flycatcher Genome Version: F_albicollis_Jun_2013
              inaylor Irvin Naylor (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

                People

                • Assignee:
                  inaylor Irvin Naylor (Inactive)
                  Reporter:
                  nfreese Nowlan Freese
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                  Dates

                  • Created:
                    Updated:
                    Resolved: