Details
-
Type: Task
-
Status: Closed (View Workflow)
-
Priority: Major
-
Resolution: Done
-
Affects Version/s: None
-
Fix Version/s: None
-
Labels:None
-
Story Points:1
-
Epic Link:
-
Sprint:Winter 6 Mar 8 - Mar 19, Spring 1 2021 Mar 22 - Apr 2, Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30
Description
Please add a step-by-step protocol for testing adding and using a local quickload site on Windows, Mac, and Linux.
Note that our current testing protocols only cover adding and using a remote quickload site.
Attachments
Issue Links
Activity
Ann Loraine
created issue -
Ann Loraine
made changes -
Field | Original Value | New Value |
---|---|---|
Epic Link | IGBF-1531 [ 17617 ] |
Ann Loraine
made changes -
Summary | Add testing adding a local quickload on Windows, Mac, Linux to Release Testing | Describe how to test the feature of adding and using a local quickload on Windows, Mac, Linux to Release Testing |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Summary | Describe how to test the feature of adding and using a local quickload on Windows, Mac, Linux to Release Testing | Describe how to test the feature of adding and using a local quickload on Windows, Mac, Linux to Release Testing. |
Ann Loraine
made changes -
Description | Please add a step-by-step protocol for testing adding and using a local quickload site on Windows, Mac, and Linux. |
Please add a step-by-step protocol for testing adding and using a local quickload site on Windows, Mac, and Linux.
Note that our current testing protocols only cover adding and using a remote quickload site. |
Logan Weidenhammer (Inactive)
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Logan Weidenhammer (Inactive)
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Logan Weidenhammer (Inactive)
made changes -
Assignee | Rachel Weidenhammer [ rweidenh ] | Nowlan Freese [ nfreese ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] | Rachel Weidenhammer [ rweidenh ] |
Logan Weidenhammer (Inactive)
made changes -
Attachment | contents.txt [ 15482 ] |
Logan Weidenhammer (Inactive)
made changes -
Attachment | species.txt [ 15483 ] |
Logan Weidenhammer (Inactive)
made changes -
Attachment | genome.txt [ 15484 ] |
Logan Weidenhammer (Inactive)
made changes -
Attachment | annots.xml [ 15485 ] |
Logan Weidenhammer (Inactive)
made changes -
Attachment | E_unicornis_Jul_2015.bed.gz.tbi [ 15486 ] |
Logan Weidenhammer (Inactive)
made changes -
Attachment | E_unicornis_Jul_2015.bed.gz [ 15487 ] |
Logan Weidenhammer (Inactive)
made changes -
Attachment | LocalQuickload-Without2bitFile.zip [ 15488 ] |
Nowlan Freese
made changes -
Assignee | Rachel Weidenhammer [ rweidenh ] | Nowlan Freese [ nfreese ] |
Nowlan Freese
made changes -
Attachment | annots.xml [ 15485 ] |
Nowlan Freese
made changes -
Attachment | contents.txt [ 15482 ] |
Nowlan Freese
made changes -
Attachment | E_unicornis_Jul_2015.bed.gz [ 15487 ] |
Nowlan Freese
made changes -
Attachment | E_unicornis_Jul_2015.bed.gz.tbi [ 15486 ] |
Nowlan Freese
made changes -
Attachment | genome.txt [ 15484 ] |
Nowlan Freese
made changes -
Attachment | species.txt [ 15483 ] |
Nowlan Freese
made changes -
Attachment | LocalQuickload-Without2bitFile.zip [ 15488 ] |
Nowlan Freese
made changes -
Attachment | quickload.zip [ 15489 ] |
Nowlan Freese
made changes -
Nowlan Freese
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Nowlan Freese
made changes -
Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
Nowlan Freese
made changes -
Ann Loraine
made changes -
Sprint | Winter 6 Mar 8 - Mar 19 [ 116 ] | Winter 6 Mar 8 - Mar 19, Spring 1 Mar 22 - Apr 2 [ 116, 117 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] |
Nowlan Freese
made changes -
Nowlan Freese
made changes -
Ann Loraine
made changes -
Sprint | Winter 6 Mar 8 - Mar 19, Spring 1 2021 Mar 22 - Apr 2 [ 116, 117 ] | Winter 6 Mar 8 - Mar 19, Spring 1 2021 Mar 22 - Apr 2, Spring 2 2021 Apr 5 - Apr 16 [ 116, 117, 118 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Sprint | Winter 6 Mar 8 - Mar 19, Spring 1 2021 Mar 22 - Apr 2, Spring 2 2021 Apr 5 - Apr 16 [ 116, 117, 118 ] | Winter 6 Mar 8 - Mar 19, Spring 1 2021 Mar 22 - Apr 2, Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30 [ 116, 117, 118, 119 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Nowlan Freese
made changes -
Attachment | quickload.zip [ 15489 ] |
Nowlan Freese
made changes -
Attachment | relative space.zip [ 15750 ] |
Nowlan Freese
made changes -
Assignee | Rachel Weidenhammer [ rweidenh ] |
Logan Weidenhammer (Inactive)
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Logan Weidenhammer (Inactive)
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Logan Weidenhammer (Inactive)
made changes -
Assignee | Rachel Weidenhammer [ rweidenh ] |
Nowlan Freese
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Nowlan Freese
made changes -
Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
Nowlan Freese
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] | Rachel Weidenhammer [ rweidenh ] |
Nowlan Freese
made changes -
Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Nowlan Freese
made changes -
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Nowlan Freese
made changes -
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Nowlan Freese
made changes -
Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Nowlan Freese
made changes -
Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Nowlan Freese
made changes -
Resolution | Done [ 10000 ] | |
Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
When testing
IGBF-510Dr. Freese and I found that my Windows 10 machine was not loading local quickloads normally.Today I created new copies of the E. unicornis files tested in
IGBF-510,expanded the annots.xml file based on the wiki,
and added a spicies.txt file.
It was not loading any genomic data in IGB 9.1.6 but was showing data from the contents.txt and genome.txt files.
Changing the direction of the / characters,
checking that tabs were used to separate text content,
moving the files within the local quickload,
or adding/removing content from the quickload files did not fix the problem.
I moved the local quickload folder from my two-word user name file path down to the C drive and it began working normally.
I then moved it up one level to "Program Files", a folder containing a space in the name, and the local quickload stopped working.
I moved it to another folder with a path not containing any spaces and the local quickload began working again.
Without spaces anywhere in the file path, local quickloads work on Windows 10.
Tested on both IGB 9.1.6 and 9.1.8.
I will now work on creating a wiki page for testing the local quickload function on IGB releases by modifying the instructions from the wiki IGB user's guide.