Details
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Type: Bug
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Status: Closed (View Workflow)
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Priority: Blocker
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 9.1.8 Major Release
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Labels:None
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Story Points:4
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Epic Link:
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Sprint:Winter 6 Mar 8 - Mar 19, Spring 1 2021 Mar 22 - Apr 2, Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30
Description
Situation: IGB does not appear to be handling spaces in folder names for local quickloads (tested on Mac and Windows).
Task: Handle spaces in folder names for local quickloads.
Note: We also need to handle spaces in file names themselves, but we have not tested whether spaces in file names for local quickloads does or does not work currently.
Attachments
Issue Links
Activity
Nowlan Freese
created issue -
Nowlan Freese
made changes -
Field | Original Value | New Value |
---|---|---|
Epic Link | IGBF-1765 [ 17855 ] |
Nowlan Freese
made changes -
Nowlan Freese
made changes -
Summary | Handle spaces in quickloads | Handle spaces in local quickloads |
Nowlan Freese
made changes -
Sprint | Spring 1 Mar 22 - Apr 2 [ 117 ] | Winter 6 Mar 8 - Mar 19 [ 116 ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] |
Nowlan Freese
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Nowlan Freese
made changes -
Status | In Progress [ 3 ] | To-Do [ 10305 ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] |
Ann Loraine
made changes -
Sprint | Winter 6 Mar 8 - Mar 19 [ 116 ] | Winter 6 Mar 8 - Mar 19, Spring 1 Mar 22 - Apr 2 [ 116, 117 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Priority | Major [ 3 ] | Blocker [ 1 ] |
Nowlan Freese
made changes -
Issue Type | Task [ 3 ] | Bug [ 1 ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] |
Nowlan Freese
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Nowlan Freese
made changes -
Nowlan Freese
made changes -
Nowlan Freese
made changes -
Status | In Progress [ 3 ] | To-Do [ 10305 ] |
Nowlan Freese
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Nowlan Freese
made changes -
Nowlan Freese
made changes -
Status | In Progress [ 3 ] | To-Do [ 10305 ] |
Ann Loraine
made changes -
Sprint | Winter 6 Mar 8 - Mar 19, Spring 1 2021 Mar 22 - Apr 2 [ 116, 117 ] | Winter 6 Mar 8 - Mar 19, Spring 1 2021 Mar 22 - Apr 2, Spring 2 2021 Apr 5 - Apr 16 [ 116, 117, 118 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Nowlan Freese
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Nowlan Freese
made changes -
Summary | Handle spaces in local quickloads | Handle special characters in local quickloads |
Story Points | 2 | 4 |
Nowlan Freese
made changes -
Summary | Handle special characters in local quickloads | Handle spaces in local quickloads |
Ann Loraine
made changes -
Sprint | Winter 6 Mar 8 - Mar 19, Spring 1 2021 Mar 22 - Apr 2, Spring 2 2021 Apr 5 - Apr 16 [ 116, 117, 118 ] | Winter 6 Mar 8 - Mar 19, Spring 1 2021 Mar 22 - Apr 2, Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30 [ 116, 117, 118, 119 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Nowlan Freese
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] | Rachel Weidenhammer [ rweidenh ] |
Nowlan Freese
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Nowlan Freese
made changes -
Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Nowlan Freese
made changes -
Assignee | Rachel Weidenhammer [ rweidenh ] |
Nowlan Freese
made changes -
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Ann Loraine
made changes -
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Ann Loraine
made changes -
Status | Reviewing Pull Request [ 10303 ] | To-Do [ 10305 ] |
Ann Loraine
made changes -
Assignee | Nowlan Freese [ nfreese ] |
Nowlan Freese
made changes -
Comment | [ Pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/873/igbf-2820 ] |
Nowlan Freese
made changes -
Status | To-Do [ 10305 ] | Pull Request Submitted [ 10101 ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] |
Ann Loraine
made changes -
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Ann Loraine
made changes -
Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] |
Nowlan Freese
made changes -
Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Nowlan Freese
made changes -
Resolution | Done [ 10000 ] | |
Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Nowlan Freese
made changes -
Fix Version/s | 9.1.8 Major Release [ 10605 ] |
When testing
IGBF-510Dr. Freese and I found that my Windows 10 machine was not loading local quickloads normally.Today I created new copies of the E. unicornis files tested in
IGBF-510,expanded the annots.xml file based on the wiki,
and added a spicies.txt file.
It was not loading any genomic data in IGB 9.1.6 but was showing data from the contents.txt and genome.txt files.
Changing the direction of the / characters,
checking that tabs were used to separate text content,
moving the files within the local quickload,
or adding/removing content from the quickload files did not fix the problem.
I moved the local quickload folder from my two-word user name file path down to the C drive and it began working normally.
I then moved it up one level to "Program Files", a folder containing a space in the name, and the local quickload stopped working.
I moved it to another folder with a path not containing any spaces and the local quickload began working again.
Without spaces anywhere in the file path, local quickloads work on Windows 10.
Tested on both IGB 9.1.6 and 9.1.8.