Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9
Description
To work on the Track Hub converter, developers need to understand how Track Hubs are used currently.
The Track Hub system has existed since 2014 and is now widely used. So there are probably many training videos available on YouTube or on the UCSC Genome Browser Web site.
For this task, do background research and identify the best, clearest, more current, and most widely viewed video training resources our developers can use to understand how Track Hubs are used on the UCSC Genome Browser Web site.
Create and curate a listing of resources and prepare to present them to the team. Kindly indicate which are the best from the list you curate.
As we collect these resources, we should pay attention to any indications that creating a new Track Hub converted site might be impossible. If the Track Hub format is too loose or too liberal, it may actually be impossible to translate it into another format. Ask: What will be the hurdles or challenges related to the epic.
Attachments
Issue Links
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2831 [ 19524 ] |
| Rank | Ranked higher |
| Story Points | 0.5 | 1 |
| Assignee | Ann Loraine [ aloraine ] |
| Link | This issue blocks IGBF-2837 [ IGBF-2837 ] |
| Assignee | Rachel Weidenhammer [ rweidenh ] |
| Sprint | Spring 2 2021 Apr 5 - Apr 16 [ 118 ] |
| Description |
To work on the Track Hub converter, developers need to understand how Track Hubs are used currently.
The Track Hub system has existed since 2014 and is now widely used. So there are probably many training videos available on YouTube or on the UCSC Genome Browser Web site. For this task, do background research and identify the best, clearest, more current, and most widely viewed video training resources our developers can use to understand how Track Hubs are used on the UCSC Genome Browser Web site. Create and curate a listing of resources and prepare to present them to the team. Kindly indicate which are the best from the list you curate. |
To work on the Track Hub converter, developers need to understand how Track Hubs are used currently.
The Track Hub system has existed since 2014 and is now widely used. So there are probably many training videos available on YouTube or on the UCSC Genome Browser Web site. For this task, do background research and identify the best, clearest, more current, and most widely viewed video training resources our developers can use to understand how Track Hubs are used on the UCSC Genome Browser Web site. Create and curate a listing of resources and prepare to present them to the team. Kindly indicate which are the best from the list you curate. As we collect these resources, we should pay attention to any indications that creating a new Track Hub converted site might be impossible. If the Track Hub format is too loose or too liberal, it may actually be impossible to translate it into another format. |
| Description |
To work on the Track Hub converter, developers need to understand how Track Hubs are used currently.
The Track Hub system has existed since 2014 and is now widely used. So there are probably many training videos available on YouTube or on the UCSC Genome Browser Web site. For this task, do background research and identify the best, clearest, more current, and most widely viewed video training resources our developers can use to understand how Track Hubs are used on the UCSC Genome Browser Web site. Create and curate a listing of resources and prepare to present them to the team. Kindly indicate which are the best from the list you curate. As we collect these resources, we should pay attention to any indications that creating a new Track Hub converted site might be impossible. If the Track Hub format is too loose or too liberal, it may actually be impossible to translate it into another format. |
To work on the Track Hub converter, developers need to understand how Track Hubs are used currently.
The Track Hub system has existed since 2014 and is now widely used. So there are probably many training videos available on YouTube or on the UCSC Genome Browser Web site. For this task, do background research and identify the best, clearest, more current, and most widely viewed video training resources our developers can use to understand how Track Hubs are used on the UCSC Genome Browser Web site. Create and curate a listing of resources and prepare to present them to the team. Kindly indicate which are the best from the list you curate. As we collect these resources, we should pay attention to any indications that creating a new Track Hub converted site might be impossible. If the Track Hub format is too loose or too liberal, it may actually be impossible to translate it into another format. Ask: What will be the hurdles or challenges related to the epic. |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Spring 2 2021 Apr 5 - Apr 16 [ 118 ] | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30 [ 118, 119 ] |
| Rank | Ranked higher |
From Irvin and Omkar,
Existing genome assemblies in UCSC genome browser: https://genome.ucsc.edu/cgi-bin/hgGateway
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Assignee | Rachel Weidenhammer [ rweidenh ] |
Also see ensembl.org for hosted track hubs.
| Assignee | Irvin Naylor [ inaylor ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30 [ 118, 119 ] | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14 [ 118, 119, 120 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Assignee | Irvin Naylor [ inaylor ] |
| Sprint | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14 [ 118, 119, 120 ] | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28 [ 118, 119, 120, 121 ] |
| Rank | Ranked higher |
| Sprint | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28 [ 118, 119, 120, 121 ] | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11 [ 118, 119, 120, 121, 122 ] |
| Rank | Ranked higher |
| Sprint | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11 [ 118, 119, 120, 121, 122 ] | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25 [ 118, 119, 120, 121, 122, 123 ] |
| Rank | Ranked higher |
| Sprint | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25 [ 118, 119, 120, 121, 122, 123 ] | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9 [ 118, 119, 120, 121, 122, 123, 124 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
(Non-Comprehensive)
Some basic pages from the UCSC user guide type pages:
Getting Started on Track Hubs
All about Track Hubs basics/setup
Creating a Track Hub
May be helpful for understanding backend:
Organizing Track Hubs into Groupings
Creating Track Data Hubs on assemblies that are not in the UCSC Browser
Dataset display characteristics in trackDb.txt file
Github page with clear info on contents of the various txt files:
https://gist.github.com/ctokheim/5209723