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  1. IGB
  2. IGBF-2836

Get familiar with track hub format

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None
    • Story Points:
      2
    • Sprint:
      Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25

      Description

      None of us is very familiar yet with the Track Hub specification.

      To gain better knowledge of it, we could write some code (e.g., a script) that given a Track Hub URL, produces an IGB Quickload file and folder structure from the Track Hub.

      When a user "opens" this folder in IGB, they should be able to then see files from the Track Hub displayed in the Available Data Sets section of IGB.

      This task will expose potential problems with mapping Track Hub specification aspects onto the IGB Quickload specification.

      If such a script existed, we could automate conversion of all available public Track Hubs.

      Request: Please add any new code to this repository: https://bitbucket.org/lorainelab/igbquickload

        Attachments

          Issue Links

            Activity

            ann.loraine Ann Loraine created issue -
            ann.loraine Ann Loraine made changes -
            Field Original Value New Value
            Epic Link IGBF-2831 [ 19524 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            ann.loraine Ann Loraine made changes -
            Link This issue is blocked by IGBF-2833 [ IGBF-2833 ]
            ann.loraine Ann Loraine made changes -
            Description None of us is very familiar yet with the Track Hub specification.

            To gain better knowledge of it, we should write some code (e.g., a script) that given a Track Hub URL, produces an IGB Quickload file and folder structure from the Track Hub.

            When a user "opens" this folder in IGB, they should be able to then see files from the Track Hub displayed in the Available Data Sets section of IGB.

            This task will expose potential problems with mapping Track Hub specification aspects onto the IGB Quickload specification.

            If such a script existed, we could automate conversion of all available public Track Hubs.
            None of us is very familiar yet with the Track Hub specification.

            To gain better knowledge of it, we should write some code (e.g., a script) that given a Track Hub URL, produces an IGB Quickload file and folder structure from the Track Hub.

            When a user "opens" this folder in IGB, they should be able to then see files from the Track Hub displayed in the Available Data Sets section of IGB.

            This task will expose potential problems with mapping Track Hub specification aspects onto the IGB Quickload specification.

            If such a script existed, we could automate conversion of all available public Track Hubs.

            Request: Please add the script to this repository: https://bitbucket.org/lorainelab/igbquickload
            ann.loraine Ann Loraine made changes -
            Sprint Spring 2 2021 Apr 5 - Apr 16 [ 118 ] Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30 [ 118, 119 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            omarne Omkar Marne (Inactive) made changes -
            Assignee Omkar Marne [ omarne ]
            omarne Omkar Marne (Inactive) made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            ann.loraine Ann Loraine made changes -
            Summary Get familiar with track hub format by writing a converter Get familiar with track hub format
            ann.loraine Ann Loraine made changes -
            Sprint Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30 [ 118, 119 ] Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14 [ 118, 119, 120 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            ann.loraine Ann Loraine made changes -
            Description None of us is very familiar yet with the Track Hub specification.

            To gain better knowledge of it, we should write some code (e.g., a script) that given a Track Hub URL, produces an IGB Quickload file and folder structure from the Track Hub.

            When a user "opens" this folder in IGB, they should be able to then see files from the Track Hub displayed in the Available Data Sets section of IGB.

            This task will expose potential problems with mapping Track Hub specification aspects onto the IGB Quickload specification.

            If such a script existed, we could automate conversion of all available public Track Hubs.

            Request: Please add the script to this repository: https://bitbucket.org/lorainelab/igbquickload
            None of us is very familiar yet with the Track Hub specification.

            To gain better knowledge of it, we could write some code (e.g., a script) that given a Track Hub URL, produces an IGB Quickload file and folder structure from the Track Hub.

            When a user "opens" this folder in IGB, they should be able to then see files from the Track Hub displayed in the Available Data Sets section of IGB.

            This task will expose potential problems with mapping Track Hub specification aspects onto the IGB Quickload specification.

            If such a script existed, we could automate conversion of all available public Track Hubs.

            Request: Please add any new code to this repository: https://bitbucket.org/lorainelab/igbquickload
            nfreese Nowlan Freese made changes -
            Status In Progress [ 3 ] To-Do [ 10305 ]
            ann.loraine Ann Loraine made changes -
            Sprint Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14 [ 118, 119, 120 ] Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28 [ 118, 119, 120, 121 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            omarne Omkar Marne (Inactive) made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            nfreese Nowlan Freese made changes -
            Status In Progress [ 3 ] To-Do [ 10305 ]
            omarne Omkar Marne (Inactive) made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            ann.loraine Ann Loraine made changes -
            Sprint Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28 [ 118, 119, 120, 121 ] Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11 [ 118, 119, 120, 121, 122 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            omarne Omkar Marne (Inactive) made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            omarne Omkar Marne (Inactive) made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            omarne Omkar Marne (Inactive) made changes -
            Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
            omarne Omkar Marne (Inactive) made changes -
            Assignee Omkar Marne [ omarne ]
            ann.loraine Ann Loraine made changes -
            Sprint Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11 [ 118, 119, 120, 121, 122 ] Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25 [ 118, 119, 120, 121, 122, 123 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            omarne Omkar Marne (Inactive) made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            omarne Omkar Marne (Inactive) made changes -
            Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
            omarne Omkar Marne (Inactive) made changes -
            Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
            omarne Omkar Marne (Inactive) made changes -
            Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
            omarne Omkar Marne (Inactive) made changes -
            Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
            omarne Omkar Marne (Inactive) made changes -
            Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
            omarne Omkar Marne (Inactive) made changes -
            Resolution Done [ 10000 ]
            Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
            omarne Omkar Marne (Inactive) made changes -
            Assignee Omkar Marne [ omarne ]

              People

              • Assignee:
                omarne Omkar Marne (Inactive)
                Reporter:
                ann.loraine Ann Loraine
              • Votes:
                0 Vote for this issue
                Watchers:
                3 Start watching this issue

                Dates

                • Created:
                  Updated:
                  Resolved: