Details
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Type: Task
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25
Description
None of us is very familiar yet with the Track Hub specification.
To gain better knowledge of it, we could write some code (e.g., a script) that given a Track Hub URL, produces an IGB Quickload file and folder structure from the Track Hub.
When a user "opens" this folder in IGB, they should be able to then see files from the Track Hub displayed in the Available Data Sets section of IGB.
This task will expose potential problems with mapping Track Hub specification aspects onto the IGB Quickload specification.
If such a script existed, we could automate conversion of all available public Track Hubs.
Request: Please add any new code to this repository: https://bitbucket.org/lorainelab/igbquickload
Attachments
Issue Links
- is blocked by
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IGBF-2833 Find, watch, and curate Track Hub instructional videos and other materials
- Closed
Activity
Field | Original Value | New Value |
---|---|---|
Epic Link | IGBF-2831 [ 19524 ] |
Rank | Ranked higher |
Description |
None of us is very familiar yet with the Track Hub specification.
To gain better knowledge of it, we should write some code (e.g., a script) that given a Track Hub URL, produces an IGB Quickload file and folder structure from the Track Hub. When a user "opens" this folder in IGB, they should be able to then see files from the Track Hub displayed in the Available Data Sets section of IGB. This task will expose potential problems with mapping Track Hub specification aspects onto the IGB Quickload specification. If such a script existed, we could automate conversion of all available public Track Hubs. |
None of us is very familiar yet with the Track Hub specification.
To gain better knowledge of it, we should write some code (e.g., a script) that given a Track Hub URL, produces an IGB Quickload file and folder structure from the Track Hub. When a user "opens" this folder in IGB, they should be able to then see files from the Track Hub displayed in the Available Data Sets section of IGB. This task will expose potential problems with mapping Track Hub specification aspects onto the IGB Quickload specification. If such a script existed, we could automate conversion of all available public Track Hubs. Request: Please add the script to this repository: https://bitbucket.org/lorainelab/igbquickload |
Sprint | Spring 2 2021 Apr 5 - Apr 16 [ 118 ] | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30 [ 118, 119 ] |
Rank | Ranked higher |
Assignee | Omkar Marne [ omarne ] |
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Summary | Get familiar with track hub format by writing a converter | Get familiar with track hub format |
Sprint | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30 [ 118, 119 ] | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14 [ 118, 119, 120 ] |
Rank | Ranked higher |
Description |
None of us is very familiar yet with the Track Hub specification.
To gain better knowledge of it, we should write some code (e.g., a script) that given a Track Hub URL, produces an IGB Quickload file and folder structure from the Track Hub. When a user "opens" this folder in IGB, they should be able to then see files from the Track Hub displayed in the Available Data Sets section of IGB. This task will expose potential problems with mapping Track Hub specification aspects onto the IGB Quickload specification. If such a script existed, we could automate conversion of all available public Track Hubs. Request: Please add the script to this repository: https://bitbucket.org/lorainelab/igbquickload |
None of us is very familiar yet with the Track Hub specification.
To gain better knowledge of it, we could write some code (e.g., a script) that given a Track Hub URL, produces an IGB Quickload file and folder structure from the Track Hub. When a user "opens" this folder in IGB, they should be able to then see files from the Track Hub displayed in the Available Data Sets section of IGB. This task will expose potential problems with mapping Track Hub specification aspects onto the IGB Quickload specification. If such a script existed, we could automate conversion of all available public Track Hubs. Request: Please add any new code to this repository: https://bitbucket.org/lorainelab/igbquickload |
Status | In Progress [ 3 ] | To-Do [ 10305 ] |
Sprint | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14 [ 118, 119, 120 ] | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28 [ 118, 119, 120, 121 ] |
Rank | Ranked higher |
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Status | In Progress [ 3 ] | To-Do [ 10305 ] |
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Sprint | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28 [ 118, 119, 120, 121 ] | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11 [ 118, 119, 120, 121, 122 ] |
Rank | Ranked higher |
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
Assignee | Omkar Marne [ omarne ] |
Sprint | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11 [ 118, 119, 120, 121, 122 ] | Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25 [ 118, 119, 120, 121, 122, 123 ] |
Rank | Ranked higher |
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Resolution | Done [ 10000 ] | |
Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Assignee | Omkar Marne [ omarne ] |