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  1. IGB
  2. IGBF-2836

Get familiar with track hub format

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None
    • Story Points:
      2
    • Sprint:
      Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25

      Description

      None of us is very familiar yet with the Track Hub specification.

      To gain better knowledge of it, we could write some code (e.g., a script) that given a Track Hub URL, produces an IGB Quickload file and folder structure from the Track Hub.

      When a user "opens" this folder in IGB, they should be able to then see files from the Track Hub displayed in the Available Data Sets section of IGB.

      This task will expose potential problems with mapping Track Hub specification aspects onto the IGB Quickload specification.

      If such a script existed, we could automate conversion of all available public Track Hubs.

      Request: Please add any new code to this repository: https://bitbucket.org/lorainelab/igbquickload

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              • Assignee:
                omarne Omkar Marne (Inactive)
                Reporter:
                ann.loraine Ann Loraine
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                • Created:
                  Updated:
                  Resolved: