Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Spring 4 2021 May 3 - May 14
Description
Situation: When loading a custom genome the 2bit file is supposed to show up as a file under Available Data with the file name. A change in the 9.1.8 master is hiding the 2bit file name.
Task: Implement a fix so that the 2bit file name shows correctly under Available Data when loading a custom genome.
Issue was that fileName variable was not being set in NewGenomeAction.java
Commit: https://bitbucket.org/nfreese/nowlanfork-igb/commits/3c32f05bba8da598fb6d256a2f0bbb0ce9f1d3df?at=IGBF-2848
To test:
Download my branch installer for IGBF-2848
Install and open IGB
Select File > Open Genome from File...
In the Reference Sequence box paste this url: http://igbquickload.org/quickload/A_thaliana_Jun_2009/A_thaliana_Jun_2009.2bit
Click OK
Select the Data Access tab and look at the Available Data box.
Under Local Files the name A_thaliana_Jun_2009.2bit should appear.