App-Store is only importing menu.CSS file. Some of the CSS code is written in https://www.bioviz.org/css/style.css.

PR: https://bitbucket.org/lorainelab/bioviz/pull-requests/59/igbf-2850-move-button-related-style-to

Need to check in testing environment(s) before merging.

I've picked up this ticket to continue Chirag's work. His old commit to the BioViz code base can be found here: https://bitbucket.org/chirag06/bioviz/commits/d6c24d7c1b89fa58e534ce55dd0dbbcec6773e59

I have made these same changes in a new commit to fix the app store issue. Both Nowlan and I have tested locally using the documentation created from IGBF-4275 and confirmed that this works.

PR: https://bitbucket.org/lorainelab/bioviz/pull-requests/185

Once this is merged, let's test if that fixed the Genome Dashboard button issue. If not, I will make a PR for the necessary changes in that repo.

PR is merged and code is deployed to bioviz.org.

Ready for testing.

Noticed an issue with the Genome Dashboard when the user does not have IGB running and clicks View in IGB the Install IGB button appears oddly (see above image).

Ann Loraine Here's the PR to revert that commit so I can make further changes: https://bitbucket.org/lorainelab/bioviz/pull-requests/186

The new PR is merged and the code deployed to bioviz.org. Ready for the next steps!

attn: Paige Kulzer

I have fixed that (Genome Versions > View in IGB >) Install IGB button on the Genome Dashboard page such that it now opens a new tab to bioviz.org/download.html as expected.

I have also created a branch in the BioViz repo for fixing the button coloring issue since the appstore repo and the genome dashboard repo both pull menu.css from there.

Genome Dashboard Branch: https://bitbucket.org/pkulzer-lorainelab/genome-dashboard/branch/IGBF-2850
BioViz Branch: https://bitbucket.org/pkulzer-lorainelab/bioviz/branch/IGBF-2850

Ready for review!

Tested on Mac
Tested Genome Dashboard and App Store. Download IGB button appears correctly and on hover is the correct color of red.
Within the Genome Dashboard View in IGB Download IGB button correctly redirects to the Download.html location.

Ready for PR

Genome Dashboard PR: https://bitbucket.org/lorainelab/genome-dashboard/pull-requests/30
BioViz PR: https://bitbucket.org/lorainelab/bioviz/pull-requests/188

Update:

• I merged the Genome Dashboard PR.
• Atlassian showed an warning message on the target repository about how cross-workspace forks were going to be disabled.
• Since our Genome Dashboard repository is a fork of Sameer Shanbhag's repository, I decided to create an entirely new repository that is not a fork by pushing the repository's master branch to an all new repository inside the lorainelab space so that our code would not be a fork of anything.
• I updated the corresponding lines in the bioviz-playbooks ansible playbooks.
• I also made a new branch "main" and made that the default branch.
• I merged the change and deployed it to bioviz.org. The behavior looks OK.

Update:

• I merged the bioviz PR.
• I deployed the new code onto bioviz.org as usual.

Ready for testing.

Tested on Mac on the Firefox browser.

Genome Dashboard: Download IGB button appears correctly and on hover is the correct color of red. Clicking the button takes the user to the downloads page. When I clicked on View in IGB View in IGB the Install IGB button appears correctly and upon clicking opens a tab to the download page.

Note: The app store and Track Hub converter have not been redeployed so I was unable to test the Install IGB button color change for those pages.

I will re-deploy the Track Hub converter.

Update:

• I just now ran the ansible playbooks to re-deploy the track hub converter code on translate.bioviz.org
• Ready for testing

attn: Nowlan Freese

Ann Loraine - I'm not seeing the change in translate.bioviz.org. It looks like it is still pulling an older menu.css file. I'm wondering if it is pulling it from a different branch/repo then the main branch of bioviz? What are the variables BIOVIZ_REPOSITORY and BIOVIZ_BRANCH set in the settings.ini?

https://bitbucket.org/lorainelab/hub-facade/src/9935e8ab1d616d44f7a42a96260421cc222f1a3b/igb_trackhub/api/apps.py?at=main#apps.py-10,13