Details
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Type: Task
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Status: To-Do (View Workflow)
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Priority: Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:0.5
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Epic Link:
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Sprint:Spring 4 2021 May 3 - May 14
Description
We are updating and improving the External View module in IGB to use the new JSON API instead of the older DAS (xml-based) API.
The two endpoints are:
Answer these questions:
- Which field does the "id" attribute from DAS XML correspond to within the JSON output? (on first glance, looks like JSON keys equate to "id" in the XML)
- Are all the genomes available via DAS XML also available via the JSON API?
Attachments
Issue Links
- relates to
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IGBF-2855 Investigate activating UCSC DAS source from External View tab
- Closed
Activity
Ann Loraine
created issue -
Ann Loraine
made changes -
Field | Original Value | New Value |
---|---|---|
Epic Link | IGBF-1765 [ 17855 ] |
Ann Loraine
made changes -
Ann Loraine
made changes -
Description |
We are updating and improving the External View module in IGB to use the new JSON API instead of the older DAS (xml-based) API.
The two endpoints are: * DAS - * JSON - Answer these questions: * Which field does the "id" attribute from DAS XML correspond to within the JSON output? (on first glance, it looks like * Are all genomes available via DAS XML also available via the JSON API On first glance, it looks like the |
We are updating and improving the External View module in IGB to use the new JSON API instead of the older DAS (xml-based) API.
The two endpoints are: * DAS - https://genome.ucsc.edu/cgi-bin/das/dsn * JSON - https://api.genome.ucsc.edu/list/ucscGenomes Answer these questions: * Which field does the "id" attribute from DAS XML correspond to within the JSON output? (on first glance, it looks like "nibPath" is the closest to what we need) * Are all the genomes available via DAS XML also available via the JSON API? |
Ann Loraine
made changes -
Description |
We are updating and improving the External View module in IGB to use the new JSON API instead of the older DAS (xml-based) API.
The two endpoints are: * DAS - https://genome.ucsc.edu/cgi-bin/das/dsn * JSON - https://api.genome.ucsc.edu/list/ucscGenomes Answer these questions: * Which field does the "id" attribute from DAS XML correspond to within the JSON output? (on first glance, it looks like "nibPath" is the closest to what we need) * Are all the genomes available via DAS XML also available via the JSON API? |
We are updating and improving the External View module in IGB to use the new JSON API instead of the older DAS (xml-based) API.
The two endpoints are: * DAS - https://genome.ucsc.edu/cgi-bin/das/dsn * JSON - https://api.genome.ucsc.edu/list/ucscGenomes Answer these questions: * Which field does the "id" attribute from DAS XML correspond to within the JSON output? (on first glance, looks like JSON keys equate to "id" in the XML) * Are all the genomes available via DAS XML also available via the JSON API? |
Ann Loraine
made changes -
Sprint | Spring 4 2021 May 3 - May 14 [ 120 ] | Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28 [ 120, 121 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Assignee | Ann Loraine [ aloraine ] |
Ann Loraine
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Ann Loraine
made changes -
Assignee | Ann Loraine [ aloraine ] |
Ann Loraine
made changes -
Sprint | Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28 [ 120, 121 ] | Spring 4 2021 May 3 - May 14 [ 120 ] |
Ann Loraine
made changes -
Status | In Progress [ 3 ] | To-Do [ 10305 ] |