Details
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Type:
Improvement
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 10.1.0
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9, Summer 3 2021 Jul 12 - Jul 23, Spring 10
Description
Situation: Many genomes in IGB are provided by UCSC DAS, a service that is similar to Quickload. Galaxy is a website that provides analysis tools for genomes. The data produced by Galaxy can then be viewed in IGB by clicking a link in Galaxy. The link works through the BookmarkUnibrowControlServlet.java class to parse out the genome and other information.
However, there is an edge case where if the genome is provided by UCSC DAS in IGB (as opposed to IGB Quickload) and the user has not first selected the correct genome, clicking the link in Galaxy will cause an error (see comment). This is because seqid is null. The seqid should be set to a chromosome/scaffold/contig of the genome. My guess is that because the genome is provided by UCSC DAS, which behaves differently than Quickload, the current methods to retrieve the seqid for the genome are returning null.
Task: Implement a fix.
Attachments
Issue Links
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1880 [ 17970 ] |
| Sprint | Spring 6 2021 May 31 - June 11 [ 122 ] | Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25 [ 122, 123 ] |
| Rank | Ranked higher |
| Sprint | Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25 [ 122, 123 ] | Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9 [ 122, 123, 124 ] |
| Rank | Ranked higher |
| Sprint | Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9 [ 122, 123, 124 ] | Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9, Summer 3 2021 Jul 12 - Jul 23 [ 122, 123, 124, 125 ] |
| Rank | Ranked higher |
| Sprint | Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9, Summer 3 2021 Jul 12 - Jul 23 [ 122, 123, 124, 125 ] | Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9, Summer 3 2021 Jul 12 - Jul 23, Summer 4 2021 Aug 2 - Aug 13 [ 122, 123, 124, 125, 126 ] |
| Rank | Ranked higher |
| Sprint | Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9, Summer 3 2021 Jul 12 - Jul 23, Summer 4 2021 Aug 2 - Aug 13 [ 122, 123, 124, 125, 126 ] | Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9, Summer 3 2021 Jul 12 - Jul 23 [ 122, 123, 124, 125 ] |
| Sprint | Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9, Summer 3 2021 Jul 12 - Jul 23 [ 122, 123, 124, 125 ] | Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9, Summer 3 2021 Jul 12 - Jul 23, Summer 1 [ 122, 123, 124, 125, 195 ] |
| Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9, Summer 3 2021 Jul 12 - Jul 23, Summer 1 [ 122, 123, 124, 125, 195 ] | Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9, Summer 3 2021 Jul 12 - Jul 23, Spring 10 [ 122, 123, 124, 125, 194 ] |
| Attachment | Screenshot 2024-05-16 at 11.37.02 AM.png [ 18393 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
| Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Story Points | 3 | 1 |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Fix Version/s | 10.1.0 [ 11000 ] |