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  1. IGB
  2. IGBF-2866

Add eFP seq browser to release testing

        Details

        • Type: Documentation
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: IGB is integrated with several external sites that enable users to view their data within IGB, such as Galaxy and eFP seq browser. Galaxy currently has release testing documentation to ensure that its integration continues to work when releasing a new version of IGB. However, we do not have release testing for eFP seq browser.

          Task: Create release testing documentation for eFP seq browser.

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              Activity

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              nfreese Nowlan Freese created issue -
              nfreese Nowlan Freese made changes -
              Field Original Value New Value
              Epic Link IGBF-1531 [ 17617 ]
              nfreese Nowlan Freese made changes -
              Description Situation: IGB is integrated with several external sites that enable users to view their data within IGB, such as Galaxy and [BAR|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.]. [Galaxy currently has release testing documentation|https://wiki.transvar.org/display/ITD/Galaxy] to ensure that its integration continues to work when releasing a new version of IGB. However, we do not have release testing for [BAR|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.].

              Task: [Create release testing documentation|https://wiki.transvar.org/display/ITD/Subsystems] for [BAR|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.].               		Situation: IGB is integrated with several external sites that enable users to view their data within IGB, such as Galaxy and [eFP seq browser|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.]. [Galaxy currently has release testing documentation|https://wiki.transvar.org/display/ITD/Galaxy] to ensure that its integration continues to work when releasing a new version of IGB. However, we do not have release testing for [BAR|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.].

              Task: [Create release testing documentation|https://wiki.transvar.org/display/ITD/Subsystems] for [BAR|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.].
              nfreese Nowlan Freese made changes -
              Description Situation: IGB is integrated with several external sites that enable users to view their data within IGB, such as Galaxy and [eFP seq browser|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.]. [Galaxy currently has release testing documentation|https://wiki.transvar.org/display/ITD/Galaxy] to ensure that its integration continues to work when releasing a new version of IGB. However, we do not have release testing for [BAR|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.].

              Task: [Create release testing documentation|https://wiki.transvar.org/display/ITD/Subsystems] for [BAR|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.].               		Situation: IGB is integrated with several external sites that enable users to view their data within IGB, such as Galaxy and [eFP seq browser|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.]. [Galaxy currently has release testing documentation|https://wiki.transvar.org/display/ITD/Galaxy] to ensure that its integration continues to work when releasing a new version of IGB. However, we do not have release testing for [eFP seq browser|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.].

              Task: [Create release testing documentation|https://wiki.transvar.org/display/ITD/Subsystems] for [eFP seq browser|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.].
              nfreese Nowlan Freese made changes -
              Summary Add BAR to release testing Add eFP seq browser to release testing
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              nfreese Nowlan Freese added a comment -

              Here is a link to the eFP-Seq Browser that may help explain some of its functionality:

              https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6899666/

              Show
              nfreese Nowlan Freese added a comment - Here is a link to the eFP-Seq Browser that may help explain some of its functionality: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6899666/
              ann.loraine Ann Loraine made changes -
              Sprint Spring 6 2021 May 31 - June 11 [ 122 ] Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25 [ 122, 123 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              nfreese Nowlan Freese made changes -
              Sprint Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25 [ 122, 123 ] Spring 6 2021 May 31 - June 11 [ 122 ]
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              nfreese Nowlan Freese added a comment -

              See release testing documentation here: https://wiki.bioviz.org/confluence/display/ITD/eFP-Seq+Browser

              Show
              nfreese Nowlan Freese added a comment - See release testing documentation here: https://wiki.bioviz.org/confluence/display/ITD/eFP-Seq+Browser
              nfreese Nowlan Freese made changes -
              Assignee Nowlan Freese [ nfreese ]
              nfreese Nowlan Freese made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              nfreese Nowlan Freese made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              nfreese Nowlan Freese made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              nfreese Nowlan Freese made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              nfreese Nowlan Freese made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              nfreese Nowlan Freese made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              nfreese Nowlan Freese made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              nfreese Nowlan Freese made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              nfreese Nowlan Freese made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
              nfreese Nowlan Freese made changes -
              Resolution Done [ 10000 ]
              Status Closed [ 6 ] To-Do [ 10305 ]
              nfreese Nowlan Freese made changes -
              Status To-Do [ 10305 ] Pull Request Submitted [ 10101 ]
              nfreese Nowlan Freese made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              nfreese Nowlan Freese made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              nfreese Nowlan Freese made changes -
              Sprint Spring 6 2021 May 31 - June 11 [ 122 ] Spring 6 2021 May 31 - June 11, Spring 6 2022 Mar 14 - Mar 25 [ 122, 141 ]
              nfreese Nowlan Freese made changes -
              Assignee Nowlan Freese [ nfreese ]
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              nfreese Nowlan Freese added a comment -

              Omkar Marne - This ticket was created and finished several months ago, but I'm not sure if we ever tested it. If you could please test it that would be great.

              Show
              nfreese Nowlan Freese added a comment - Omkar Marne - This ticket was created and finished several months ago, but I'm not sure if we ever tested it. If you could please test it that would be great.
              nfreese Nowlan Freese made changes -
              Description Situation: IGB is integrated with several external sites that enable users to view their data within IGB, such as Galaxy and [eFP seq browser|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.]. [Galaxy currently has release testing documentation|https://wiki.transvar.org/display/ITD/Galaxy] to ensure that its integration continues to work when releasing a new version of IGB. However, we do not have release testing for [eFP seq browser|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.].

              Task: [Create release testing documentation|https://wiki.transvar.org/display/ITD/Subsystems] for [eFP seq browser|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.].               		Situation: IGB is integrated with several external sites that enable users to view their data within IGB, such as Galaxy and [eFP seq browser|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.]. [Galaxy currently has release testing documentation|https://wiki.transvar.org/display/ITD/Galaxy] to ensure that its integration continues to work when releasing a new version of IGB. However, we do not have release testing for [eFP seq browser|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.].

              Task: [Create release testing documentation|https://wiki.bioviz.org/confluence/display/ITD/Subsystems] for [eFP seq browser|https://bar.utoronto.ca/efp-seq_browser/#:~:text=The%20eFP%2DSeq%20Browser%20allows,interest%20in%20different%20expression%20datasets.&text=The%20output%20is%20a%20table,the%20samples%20in%20the%20database.].
              nfreese Nowlan Freese made changes -
              Assignee Omkar Marne [ omarne ]
              omarne Omkar Marne (Inactive) made changes -
              Attachment Windows.png [ 17199 ]
              omarne Omkar Marne (Inactive) made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              omarne Omkar Marne (Inactive) made changes -
              Attachment Ubuntu 20.04.1.png [ 17200 ]
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              omarne Omkar Marne (Inactive) added a comment - - edited

              Tested both on Ubuntu Linux 20.04.1 and Windows 11. Test results are as expected.

              Closing the ticket.

              Show
              omarne Omkar Marne (Inactive) added a comment - - edited Tested both on Ubuntu Linux 20.04.1 and Windows 11. Test results are as expected. Closing the ticket.
              omarne Omkar Marne (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
              nfreese Nowlan Freese made changes -
              Assignee Omkar Marne [ omarne ] Nowlan Freese [ nfreese ]

                People

                • Assignee:
                  nfreese Nowlan Freese
                  Reporter:
                  nfreese Nowlan Freese
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                    Updated:
                    Resolved: