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  1. IGB
  2. IGBF-2875

Create contents.txt and genome.txt file using UCSC APIs

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          To create a contents.txt file we just need following two fields from the API https://api.genome.ucsc.edu/list/hubGenomes?hubUrl=http://hgdownload.soe.ucsc.edu/hubs/mouseStrains/hub.txt.
          1) Genome name
          2) Description

          To create genome file we need chromosome name and its size. We can get this information from the following API
          https://api.genome.ucsc.edu/list/chromosomes?hubUrl=http://hgdownload.soe.ucsc.edu/hubs/mouseStrains/hub.txt;genome=CAST_EiJ;track=assembly

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              Task - A task that needs to be done. IGBF-2878 Implement TrackHub Application 2 which is an endpoint for all the IGB requests.

              • Major - Major loss of function.
              • Closed

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                  • Assignee:
                    chirag24 Chirag Chandrahas Shetty (Inactive)
                    Reporter:
                    chirag24 Chirag Chandrahas Shetty (Inactive)
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                      Updated:
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