Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:5
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Epic Link:
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Sprint:Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9, Summer 3 2021 Jul 12 - Jul 23
Description
Create bibliography of crispr design tool articles.
Attachments
Activity
This website effectively does exactly what we were looking for:
https://bioinfogp.cnb.csic.es/tools/wereview/crisprtools/
Next step is to determine which of the top cited tools supports activation/repression and plants.
Slide deck summarizing the data is located in Dropbox > IGB > Qi Collaboration > Literature > crisprDesignSummary
Editing & memorizing slide deck (for future use)
I have added two columns to help summarize the visualizations that are included as part of each CRISPR design tool.
Visualization asks whether a genome browser style visualization of the results is included. Some browsers include what appears to be a fully interactive genome browser. Others include static images. Most include non-interactive text based results.
Annotation asks whether the genome browsers with interactive genome browsers or static images also include the gene annotation.
I have also included comments if the CRISPR design links out to other genome browsers such as UCSC, ENSEMBL, IGV, etc.
I reviewed the spreadsheet and the slidedeck, adding some notes & refinements to the slide deck. We showed the work to Yipeng Qi last week in advance of the more formal meeting coming up this week.
Moving to Done.
Note: Materials and notes are stored in the IGB Dropbox in a folder named for Dr. Qi.
I am currently working on an excel spreadsheet (tools.xlsx) located in Dropbox > IGB > Qi Collaboration > Literature > tools.xlsx