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  1. IGB
  2. IGBF-2943

Investigate recent literature on compendium databases with RNA-Seq

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          Find five "top papers" (much-cited, influential) in which authors have developed compendium data with RNA-Seq data, focusing on bulk RNA-Seq primarily.

          Question: Do any sites provide a REST endpoint that is easy to use and enables import of "raw" counts or other type of expression value into interactive computational environments such as RStudio or Jupyter notebooks?

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              Task - A task that needs to be done. IGBF-2966 Investigate rice RNA-Seq paper and data

              • Major - Major loss of function.
              • Closed

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                ann.loraine Ann Loraine created issue -
                ann.loraine Ann Loraine made changes -
                Field Original Value New Value
                Epic Link IGBF-2883 [ 21320 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 3 2021Sep 13 - Sep 24 [ 129 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Description Find five "top papers" (much-cited, influential) in which authors have developed compendium data with RNA-Seq data, focusing on bulk RNA-Seq primarily. Find five "top papers" (much-cited, influential) in which authors have developed compendium data with RNA-Seq data, focusing on bulk RNA-Seq primarily.

                Question: Do any sites provide a REST endpoint that is easy to use and enables import of "raw" counts or other type of expression value into interactive computational environments such as RStudio or Jupyter notebooks?
                ann.loraine Ann Loraine made changes -
                Description Find five "top papers" (much-cited, influential) in which authors have developed compendium data with RNA-Seq data, focusing on bulk RNA-Seq primarily.

                Question: Do any sites provide a REST endpoint that is easy to use and enables import of "raw" counts or other type of expression value into interactive computational environments such as RStudio or Jupyter notebooks?                 		Find five "top papers" (much-cited, influential) in which authors have developed compendium data with RNA-Seq data, focusing on bulk RNA-Seq primarily.

                Question: Do any sites provide a REST endpoint that is easy to use and enables import of "raw" counts or other type of expression value into interactive computational environments such as RStudio or Jupyter notebooks?

                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                nfreese Nowlan Freese made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                nfreese Nowlan Freese made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                nfreese Nowlan Freese made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-2966 [ IGBF-2966 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-3020 [ IGBF-3020 ]

                  People

                  • Assignee:
                    nfreese Nowlan Freese
                    Reporter:
                    ann.loraine Ann Loraine
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                    Dates

                    • Created:
                      Updated:
                      Resolved: