Details
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Type:
New Feature
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 10.0.0 Major Release
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Labels:
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Story Points:5
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Epic Link:
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Sprint:Fall 1 - Sep 5, Fall 2 2023 Sep 17
Description
Situation: A user inquired as to whether there was a way for IGB to indicate which exon had been selected. For example, many studies report mutations by which exon they affect (i.e. the mutation is found on the eleventh exon). Currently IGB does not provide this information. Counting exons visually can be quite challenging, especially in humans where exons are very small relative to introns, and can be separated by hundreds of thousands of base pairs.
Task: Investigate the IGB codebase to determine if there would be a relatively simple way to add the exon number to the tooltip or selection info. For example, if a user selects the second exon of a gene model, the tooltip or selection info tab would have a property titled "exon" and the value would be an integer representing the exon's number.
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1765 [ 17855 ] |
| Sprint | Fall 6 2021 Oct 25 - Nov 5 [ 132 ] |
| Rank | Ranked higher |
| Rank | Ranked higher |
| Labels | intermediate |
| Assignee | Kaushik Gopu [ kgopu ] |
| Sprint | Fall 1 - Sep 5 [ 82 ] |
| Attachment | H_sapiens_Dec_2013_smallBedExample.bed [ 17960 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Summary | Investigate adding exon number to selection info | Add exon number to selection info |
| Story Points | 1 | 3 |
| Sprint | Fall 1 - Sep 5 [ 82 ] | Fall 1 - Sep 5, Fall 2 2023 Sep 17 [ 82, 178 ] |
| Rank | Ranked higher |
| Story Points | 3 | 5 |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Kaushik Gopu [ kgopu ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Assignee | Nowlan Freese [ nfreese ] | Kaushik Gopu [ kgopu ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Kaushik Gopu [ kgopu ] | Ann Loraine [ aloraine ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Assignee | Kaushik Gopu [ kgopu ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Fix Version/s | 10.0.0 Major Release [ 10900 ] |
| Issue Type | Improvement [ 4 ] | New Feature [ 2 ] |