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  1. IGB
  2. IGBF-2995

Compare gene expression

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          Identify differentially expressed genes.

          Goals:

          • Identify DE genes within a genotype between treatment and control
          • Identify genes with treatment responses that differ across genotypes (genotype by treatment interaction)
          • Identify genes differentially expressed between are and VF36 genotypes

          Create Markdowns documenting code and results.

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              ann.loraine Ann Loraine created issue -
              ann.loraine Ann Loraine made changes -
              Field Original Value New Value
              Epic Link IGBF-2993 [ 21429 ]
              ann.loraine Ann Loraine made changes -
              Summary Compare gene expression across treatment and control samples Compare gene expression
              ann.loraine Ann Loraine made changes -
              Description Identify differentially expressed genes across treatments.

              Two goals:

              * Identify DE genes within a genotype
              * Identify genes with responses that differ across genotypes (genotype by treatment interaction)

              Create Markdowns documenting code and results.               		Identify differentially expressed genes.

              Goals:

              * Identify DE genes within a genotype between treatment and control
              * Identify genes with treatment responses that differ across genotypes (genotype by treatment interaction)
              * Identify genes differentially expressed between are and VF36 genotypes

              Create Markdowns documenting code and results.
              ann.loraine Ann Loraine made changes -
              Sprint Fall 6 2021 Oct 25 - Nov 5 [ 132 ] Fall 6 2021 Oct 25 - Nov 5, Fall 7 2021 Nov 8 - Nov 19 [ 132, 133 ]
              ann.loraine Ann Loraine made changes -
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              ann.loraine Ann Loraine made changes -
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              ann.loraine Ann Loraine added a comment -

              This has been done by Rob Reid. Closing.

              Show
              ann.loraine Ann Loraine added a comment - This has been done by Rob Reid. Closing.
              ann.loraine Ann Loraine made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              ann.loraine Ann Loraine made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              ann.loraine Ann Loraine made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              ann.loraine Ann Loraine made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              ann.loraine Ann Loraine made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              ann.loraine Ann Loraine made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              ann.loraine Ann Loraine made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              ann.loraine Ann Loraine made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              ann.loraine Ann Loraine made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
              ann.loraine Ann Loraine made changes -
              Assignee Ann Loraine [ aloraine ]

                People

                • Assignee:
                  ann.loraine Ann Loraine
                  Reporter:
                  ann.loraine Ann Loraine
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                  Dates

                  • Created:
                    Updated:
                    Resolved: