Details
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Type:
Improvement
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 9.1.10 Major Release
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Labels:None
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Story Points:0.25
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Epic Link:
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Sprint:Spring 1 2022 Jan 3 - Jan 14, Spring 2 2022 Jan 18 - Jan 28
Description
Currently, bookmark "default name" looks like:
H_sapiens_Dec_2013, chr1 : 0 - 248,956,422
The "default name" is getting constructed from the genome name (e.g., H_sapiens_Dec_2013), the currently viewed chromosome (e.g., chr1), and the currently visible region (e.g., 0 - 248,956,422).
The format of the default name is OK, but it would be more useful if it used a format accepted by the "samtools view" command. (Samtools is a very popular program in bioinformatics.)
Samtools view accepts a region string that looks like:
chr1:0-248,956,422
Note it is very similar to our current "default" name, but ours contains space characters.
Let's modify our "default" name to look like what samtools view accepts, by removing the space characters in the region string part.
For example:
H_sapiens_Dec_2013, chr1 : 0 - 248,956,422
will be instead:
H_sapiens_Dec_2013, chr1:0-248,956,422
Please change the format so that the "default name" is
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