Details
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Type:
Epic
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Status: To-Do (View Workflow)
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Epic Name:Publish rice splicing and methylation results
Description
The study investigated how two different rice varieties responded to salt treatment, including:
- Agami, salt-tolerant
- M103, salt-sensitive
A PDF version of the research proposal description is attached.
Summarizing the study design:
Roots and shoots treated with a methylation inhibitor and/or salt and then RNA-Seq and bisulfite sequencing was done.
Resources:
- The SRA project identifier PRJNA481973 (see link) describes the data sets.
- To view the data, add this address as a new Quickload data source: http://lorainelab-quickload.scidas.org/saltyrice/
- Code repository: https://bitbucket.org/lorainelab/bseq_rice/src/master/
- Somewhat salty tweet thread in which scientists debate whether methylation matters