Details
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Type: Task
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Status: Closed (View Workflow)
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Priority: Blocker
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:3
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Sprint:Spring 1 2022 Jan 3 - Jan 14, Spring 2 2022 Jan 18 - Jan 28, Spring 3 2022 Jan 31 - Feb 11, Spring 5 2022 Feb 28 - Mar 11
Description
To understand the significance of our results, we need to learn the current state of knowledge in the field.
For this task, we assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants.
Also, when relevant, please make note of software packages used to analyze splicing and detect splicing pattern changes.
Attachments
Issue Links
Activity
Ann Loraine
created issue -
Ann Loraine
made changes -
Field | Original Value | New Value |
---|---|---|
Epic Link | IGBF-3039 [ 21553 ] |
Ann Loraine
made changes -
Description |
To understand the significance of our results, we need to learn the current state of knowledge in the field.
For this task, assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants. Summarize the major findings important for interpreting our data. Possible deliverables (ideas): * Slide deck summarizing the current state of knowledge * Endnote bibliography with references * Word or google doc with a written narrative describing the current state of the field * Word or google doc highlighting major unanswered questions about the field |
To understand the significance of our results, we need to learn the current state of knowledge in the field.
For this task, assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants. Summarize the major findings important for interpreting our data. Also, make note of software packages used to analyze splicing and detect splicing pattern changes. Possible deliverables (ideas): * Slide deck summarizing the current state of knowledge * Endnote bibliography with references * Word or google doc with a written narrative describing the current state of the field * Word or google doc highlighting major unanswered questions about the field |
Ann Loraine
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Ann Loraine
made changes -
Assignee | Ann Loraine [ aloraine ] |
Ann Loraine
made changes -
Description |
To understand the significance of our results, we need to learn the current state of knowledge in the field.
For this task, assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants. Summarize the major findings important for interpreting our data. Also, make note of software packages used to analyze splicing and detect splicing pattern changes. Possible deliverables (ideas): * Slide deck summarizing the current state of knowledge * Endnote bibliography with references * Word or google doc with a written narrative describing the current state of the field * Word or google doc highlighting major unanswered questions about the field |
To understand the significance of our results, we need to learn the current state of knowledge in the field.
For this task, assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants. Summarize the major findings important for interpreting our data. Also, make note of software packages used to analyze splicing and detect splicing pattern changes. Possible deliverables (ideas): * Slide deck summarizing the current state of knowledge * Endnote bibliography database file * Chronology of major discoveries * Word or google doc highlighting major unanswered questions about the field |
Ann Loraine
made changes -
Description |
To understand the significance of our results, we need to learn the current state of knowledge in the field.
For this task, assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants. Summarize the major findings important for interpreting our data. Also, make note of software packages used to analyze splicing and detect splicing pattern changes. Possible deliverables (ideas): * Slide deck summarizing the current state of knowledge * Endnote bibliography database file * Chronology of major discoveries * Word or google doc highlighting major unanswered questions about the field |
To understand the significance of our results, we need to learn the current state of knowledge in the field.
For this task, assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants. Summarize the major findings important for interpreting our data. Also, make note of software packages used to analyze splicing and detect splicing pattern changes. Possible deliverables (ideas): * Slide deck summarizing the current state of knowledge * Endnote bibliography database file with notes * Chronology of major discoveries * Word or google doc highlighting major unanswered questions about the field |
Ann Loraine
made changes -
Comment | [ Youtube video from a PhD candidate talk on differential alternative splicing analysis: https://www.youtube.com/watch?v=LknDQw08P5w ] |
Ann Loraine
made changes -
Assignee | Ann Loraine [ aloraine ] |
Ann Loraine
made changes -
Status | In Progress [ 3 ] | To-Do [ 10305 ] |
Ann Loraine
made changes -
Description |
To understand the significance of our results, we need to learn the current state of knowledge in the field.
For this task, assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants. Summarize the major findings important for interpreting our data. Also, make note of software packages used to analyze splicing and detect splicing pattern changes. Possible deliverables (ideas): * Slide deck summarizing the current state of knowledge * Endnote bibliography database file with notes * Chronology of major discoveries * Word or google doc highlighting major unanswered questions about the field |
To understand the significance of our results, we need to learn the current state of knowledge in the field.
For this task, we assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing and methylation patterns in plants. Summarize the major findings important for interpreting our data. Also, make note of software packages used to analyze splicing and detect splicing pattern changes. Possible deliverables (ideas): * Slide deck summarizing the current state of knowledge * Endnote bibliography database file with notes * Chronology of major discoveries * Word or google doc highlighting major unanswered questions about the field |
Ann Loraine
made changes -
Description |
To understand the significance of our results, we need to learn the current state of knowledge in the field.
For this task, we assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing and methylation patterns in plants. Summarize the major findings important for interpreting our data. Also, make note of software packages used to analyze splicing and detect splicing pattern changes. Possible deliverables (ideas): * Slide deck summarizing the current state of knowledge * Endnote bibliography database file with notes * Chronology of major discoveries * Word or google doc highlighting major unanswered questions about the field |
To understand the significance of our results, we need to learn the current state of knowledge in the field.
For this task, we assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing and methylation patterns in plants. Also, make note of software packages used to analyze splicing and detect splicing pattern changes. Possible deliverables (ideas): * Slide deck summarizing the current state of knowledge * Endnote bibliography database file with notes * Chronology of major discoveries * Word or google doc highlighting major unanswered questions about the field |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] |
Ann Loraine
made changes -
Description |
To understand the significance of our results, we need to learn the current state of knowledge in the field.
For this task, we assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing and methylation patterns in plants. Also, make note of software packages used to analyze splicing and detect splicing pattern changes. Possible deliverables (ideas): * Slide deck summarizing the current state of knowledge * Endnote bibliography database file with notes * Chronology of major discoveries * Word or google doc highlighting major unanswered questions about the field |
To understand the significance of our results, we need to learn the current state of knowledge in the field.
For this task, we assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing and methylation patterns in plants. Also, when relevant, please make note of software packages used to analyze splicing and detect splicing pattern changes. |
Nowlan Freese
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Nowlan Freese
made changes -
Comment |
[
One of the anchor authors is Harkamal Walia, who provided the agami seeds for our study. He has done a lot of very good work on rice. ] |
Nowlan Freese
made changes -
Comment |
[ [Genome-wide discovery of natural variation in pre-mRNA splicing and prioritising causal alternative splicing to salt stress response in rice|https://pubmed.ncbi.nlm.nih.gov/33453070/]
] |
Nowlan Freese
made changes -
Attachment | IGBF3041.enl [ 17063 ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] |
Nowlan Freese
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Ann Loraine
made changes -
Sprint | Spring 1 2022 Jan 3 - Jan 14 [ 136 ] | Spring 1 2022 Jan 3 - Jan 14, Spring 2 2022 Jan 18 - Jan 28 [ 136, 137 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Nowlan Freese
made changes -
Description |
To understand the significance of our results, we need to learn the current state of knowledge in the field.
For this task, we assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing and methylation patterns in plants. Also, when relevant, please make note of software packages used to analyze splicing and detect splicing pattern changes. |
To understand the significance of our results, we need to learn the current state of knowledge in the field.
For this task, we assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants. Also, when relevant, please make note of software packages used to analyze splicing and detect splicing pattern changes. |
Nowlan Freese
made changes -
Ann Loraine
made changes -
Ann Loraine
made changes -
Ann Loraine
made changes -
Ann Loraine
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Ann Loraine
made changes -
Assignee | Ann Loraine [ aloraine ] |
Nowlan Freese
made changes -
Ann Loraine
made changes -
Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
Ann Loraine
made changes -
Sprint | Spring 1 2022 Jan 3 - Jan 14, Spring 2 2022 Jan 18 - Jan 28 [ 136, 137 ] | Spring 1 2022 Jan 3 - Jan 14, Spring 2 2022 Jan 18 - Jan 28, Spring 3 2022 Jan 31 - Feb 11 [ 136, 137, 138 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Sprint | Spring 1 2022 Jan 3 - Jan 14, Spring 2 2022 Jan 18 - Jan 28, Spring 3 2022 Jan 31 - Feb 11 [ 136, 137, 138 ] | Spring 1 2022 Jan 3 - Jan 14, Spring 2 2022 Jan 18 - Jan 28, Spring 3 2022 Jan 31 - Feb 11, Spring 4 2022 Feb 14 - Feb 25 [ 136, 137, 138, 139 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Sprint | Spring 1 2022 Jan 3 - Jan 14, Spring 2 2022 Jan 18 - Jan 28, Spring 3 2022 Jan 31 - Feb 11, Spring 4 2022 Feb 14 - Feb 25 [ 136, 137, 138, 139 ] | Spring 1 2022 Jan 3 - Jan 14, Spring 2 2022 Jan 18 - Jan 28, Spring 3 2022 Jan 31 - Feb 11, Spring 5 2022 Feb 28 - Mar 11 [ 136, 137, 138, 140 ] |
Ann Loraine
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Ann Loraine
made changes -
Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Ann Loraine
made changes -
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Ann Loraine
made changes -
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Ann Loraine
made changes -
Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Ann Loraine
made changes -
Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Ann Loraine
made changes -
Resolution | Done [ 10000 ] | |
Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Ann Loraine
made changes -
Assignee | Ann Loraine [ aloraine ] | Nowlan Freese [ nfreese ] |
Reviews stresses and epigenetics: https://academic.oup.com/jxb/article-abstract/72/20/6836/6327780?redirectedFrom=fulltext