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  1. IGB
  2. IGBF-3041

Review splicing literature for salt stress effects

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Blocker
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Description

      To understand the significance of our results, we need to learn the current state of knowledge in the field.

      For this task, we assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants.

      Also, when relevant, please make note of software packages used to analyze splicing and detect splicing pattern changes.

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            ann.loraine Ann Loraine created issue -
            ann.loraine Ann Loraine made changes -
            Field Original Value New Value
            Epic Link IGBF-3039 [ 21553 ]
            ann.loraine Ann Loraine made changes -
            Description To understand the significance of our results, we need to learn the current state of knowledge in the field.

            For this task, assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants.

            Summarize the major findings important for interpreting our data.

            Possible deliverables (ideas):

            * Slide deck summarizing the current state of knowledge
            * Endnote bibliography with references
            * Word or google doc with a written narrative describing the current state of the field
            * Word or google doc highlighting major unanswered questions about the field
            To understand the significance of our results, we need to learn the current state of knowledge in the field.

            For this task, assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants.

            Summarize the major findings important for interpreting our data. Also, make note of software packages used to analyze splicing and detect splicing pattern changes.

            Possible deliverables (ideas):

            * Slide deck summarizing the current state of knowledge
            * Endnote bibliography with references
            * Word or google doc with a written narrative describing the current state of the field
            * Word or google doc highlighting major unanswered questions about the field
            ann.loraine Ann Loraine made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ]
            ann.loraine Ann Loraine made changes -
            Description To understand the significance of our results, we need to learn the current state of knowledge in the field.

            For this task, assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants.

            Summarize the major findings important for interpreting our data. Also, make note of software packages used to analyze splicing and detect splicing pattern changes.

            Possible deliverables (ideas):

            * Slide deck summarizing the current state of knowledge
            * Endnote bibliography with references
            * Word or google doc with a written narrative describing the current state of the field
            * Word or google doc highlighting major unanswered questions about the field
            To understand the significance of our results, we need to learn the current state of knowledge in the field.

            For this task, assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants.

            Summarize the major findings important for interpreting our data. Also, make note of software packages used to analyze splicing and detect splicing pattern changes.

            Possible deliverables (ideas):

            * Slide deck summarizing the current state of knowledge
            * Endnote bibliography database file
            * Chronology of major discoveries
            * Word or google doc highlighting major unanswered questions about the field
            ann.loraine Ann Loraine made changes -
            Description To understand the significance of our results, we need to learn the current state of knowledge in the field.

            For this task, assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants.

            Summarize the major findings important for interpreting our data. Also, make note of software packages used to analyze splicing and detect splicing pattern changes.

            Possible deliverables (ideas):

            * Slide deck summarizing the current state of knowledge
            * Endnote bibliography database file
            * Chronology of major discoveries
            * Word or google doc highlighting major unanswered questions about the field
            To understand the significance of our results, we need to learn the current state of knowledge in the field.

            For this task, assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants.

            Summarize the major findings important for interpreting our data. Also, make note of software packages used to analyze splicing and detect splicing pattern changes.

            Possible deliverables (ideas):

            * Slide deck summarizing the current state of knowledge
            * Endnote bibliography database file with notes
            * Chronology of major discoveries
            * Word or google doc highlighting major unanswered questions about the field
            ann.loraine Ann Loraine made changes -
            Comment [ Youtube video from a PhD candidate talk on differential alternative splicing analysis: https://www.youtube.com/watch?v=LknDQw08P5w ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ]
            ann.loraine Ann Loraine made changes -
            Status In Progress [ 3 ] To-Do [ 10305 ]
            ann.loraine Ann Loraine made changes -
            Description To understand the significance of our results, we need to learn the current state of knowledge in the field.

            For this task, assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants.

            Summarize the major findings important for interpreting our data. Also, make note of software packages used to analyze splicing and detect splicing pattern changes.

            Possible deliverables (ideas):

            * Slide deck summarizing the current state of knowledge
            * Endnote bibliography database file with notes
            * Chronology of major discoveries
            * Word or google doc highlighting major unanswered questions about the field
            To understand the significance of our results, we need to learn the current state of knowledge in the field.

            For this task, we assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing and methylation patterns in plants.

            Summarize the major findings important for interpreting our data. Also, make note of software packages used to analyze splicing and detect splicing pattern changes.

            Possible deliverables (ideas):

            * Slide deck summarizing the current state of knowledge
            * Endnote bibliography database file with notes
            * Chronology of major discoveries
            * Word or google doc highlighting major unanswered questions about the field
            ann.loraine Ann Loraine made changes -
            Description To understand the significance of our results, we need to learn the current state of knowledge in the field.

            For this task, we assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing and methylation patterns in plants.

            Summarize the major findings important for interpreting our data. Also, make note of software packages used to analyze splicing and detect splicing pattern changes.

            Possible deliverables (ideas):

            * Slide deck summarizing the current state of knowledge
            * Endnote bibliography database file with notes
            * Chronology of major discoveries
            * Word or google doc highlighting major unanswered questions about the field
            To understand the significance of our results, we need to learn the current state of knowledge in the field.

            For this task, we assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing and methylation patterns in plants.

            Also, make note of software packages used to analyze splicing and detect splicing pattern changes.

            Possible deliverables (ideas):

            * Slide deck summarizing the current state of knowledge
            * Endnote bibliography database file with notes
            * Chronology of major discoveries
            * Word or google doc highlighting major unanswered questions about the field
            nfreese Nowlan Freese made changes -
            Assignee Nowlan Freese [ nfreese ]
            ann.loraine Ann Loraine made changes -
            Description To understand the significance of our results, we need to learn the current state of knowledge in the field.

            For this task, we assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing and methylation patterns in plants.

            Also, make note of software packages used to analyze splicing and detect splicing pattern changes.

            Possible deliverables (ideas):

            * Slide deck summarizing the current state of knowledge
            * Endnote bibliography database file with notes
            * Chronology of major discoveries
            * Word or google doc highlighting major unanswered questions about the field
            To understand the significance of our results, we need to learn the current state of knowledge in the field.

            For this task, we assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing and methylation patterns in plants.

            Also, when relevant, please make note of software packages used to analyze splicing and detect splicing pattern changes.

            nfreese Nowlan Freese made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            nfreese Nowlan Freese made changes -
            Comment [

            One of the anchor authors is Harkamal Walia, who provided the agami seeds for our study. He has done a lot of very good work on rice.
            ]
            nfreese Nowlan Freese made changes -
            Comment [ [Genome-wide discovery of natural variation in pre-mRNA splicing and prioritising causal alternative splicing to salt stress response in rice|https://pubmed.ncbi.nlm.nih.gov/33453070/]
            ]
            nfreese Nowlan Freese made changes -
            Attachment IGBF3041.enl [ 17063 ]
            nfreese Nowlan Freese made changes -
            Assignee Nowlan Freese [ nfreese ]
            nfreese Nowlan Freese made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            ann.loraine Ann Loraine made changes -
            Sprint Spring 1 2022 Jan 3 - Jan 14 [ 136 ] Spring 1 2022 Jan 3 - Jan 14, Spring 2 2022 Jan 18 - Jan 28 [ 136, 137 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            nfreese Nowlan Freese made changes -
            Description To understand the significance of our results, we need to learn the current state of knowledge in the field.

            For this task, we assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing and methylation patterns in plants.

            Also, when relevant, please make note of software packages used to analyze splicing and detect splicing pattern changes.

            To understand the significance of our results, we need to learn the current state of knowledge in the field.

            For this task, we assemble and summarize original research articles published in the last two to three years that investigated how salt stress affects splicing patterns in plants.

            Also, when relevant, please make note of software packages used to analyze splicing and detect splicing pattern changes.

            nfreese Nowlan Freese made changes -
            Link This issue relates to IGBF-3059 [ IGBF-3059 ]
            ann.loraine Ann Loraine made changes -
            Link This issue relates to IGBF-3045 [ IGBF-3045 ]
            ann.loraine Ann Loraine made changes -
            Link This issue blocks IGBF-3045 [ IGBF-3045 ]
            ann.loraine Ann Loraine made changes -
            Link This issue relates to IGBF-3045 [ IGBF-3045 ]
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ]
            nfreese Nowlan Freese made changes -
            Link This issue relates to IGBF-3069 [ IGBF-3069 ]
            ann.loraine Ann Loraine made changes -
            Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
            ann.loraine Ann Loraine made changes -
            Sprint Spring 1 2022 Jan 3 - Jan 14, Spring 2 2022 Jan 18 - Jan 28 [ 136, 137 ] Spring 1 2022 Jan 3 - Jan 14, Spring 2 2022 Jan 18 - Jan 28, Spring 3 2022 Jan 31 - Feb 11 [ 136, 137, 138 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            ann.loraine Ann Loraine made changes -
            Sprint Spring 1 2022 Jan 3 - Jan 14, Spring 2 2022 Jan 18 - Jan 28, Spring 3 2022 Jan 31 - Feb 11 [ 136, 137, 138 ] Spring 1 2022 Jan 3 - Jan 14, Spring 2 2022 Jan 18 - Jan 28, Spring 3 2022 Jan 31 - Feb 11, Spring 4 2022 Feb 14 - Feb 25 [ 136, 137, 138, 139 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            ann.loraine Ann Loraine made changes -
            Sprint Spring 1 2022 Jan 3 - Jan 14, Spring 2 2022 Jan 18 - Jan 28, Spring 3 2022 Jan 31 - Feb 11, Spring 4 2022 Feb 14 - Feb 25 [ 136, 137, 138, 139 ] Spring 1 2022 Jan 3 - Jan 14, Spring 2 2022 Jan 18 - Jan 28, Spring 3 2022 Jan 31 - Feb 11, Spring 5 2022 Feb 28 - Mar 11 [ 136, 137, 138, 140 ]
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            ann.loraine Ann Loraine made changes -
            Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
            ann.loraine Ann Loraine made changes -
            Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
            ann.loraine Ann Loraine made changes -
            Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
            ann.loraine Ann Loraine made changes -
            Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
            ann.loraine Ann Loraine made changes -
            Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
            ann.loraine Ann Loraine made changes -
            Resolution Done [ 10000 ]
            Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ] Nowlan Freese [ nfreese ]

              People

              • Assignee:
                nfreese Nowlan Freese
                Reporter:
                ann.loraine Ann Loraine
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                Dates

                • Created:
                  Updated:
                  Resolved: