Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-3042

Get RNA-Seq data from SRA

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Create and run a script (fasterq-dump-rnaseq.sh) that retrieves RNA-Seq data files from the SRA and converts them to fastq format.

          See linked issue for a comment containing a first draft of the script code: IGBF-3040

          Put script under version-control in:

          • salty_rice/bseq_rice/src

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3040 Create samplesheet with SRR run identifiers and experimental attributes

              • Major - Major loss of function.
              • Closed

                Activity

                No work has yet been logged on this issue.

                  People

                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    1 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: