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  1. IGB
  2. IGBF-3097

Generate RNA-Seq bedgraph scaled files

        Details

        • Type: Task
        • Status: To-Do (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: The NF-core RNA-Seq pipeline did not output bedgraph scaled files.

          Task: Create bedgraph scaled files from the aligned RNA-Seq bam files on the cluster.

          Files are located: /nobackup/lorainelab/salty_rice/rna-seq/results/star_salmon

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              nfreese Nowlan Freese created issue -
              nfreese Nowlan Freese made changes -
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              Epic Link IGBF-3039 [ 21553 ]

                People

                • Assignee:
                  Unassigned
                  Reporter:
                  nfreese Nowlan Freese
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                  Dates

                  • Created:
                    Updated: