Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Spring 7 2022 Mar 28 - Apr 8, Spring 8 2022 Apr 11 - Apr 22
Description
When the quickload-derived trackhub (IGBF-3066) is displayed in the UCSC genome browser, all files are displayed all together under "other". Can they be grouped by folder instead?
Attachments
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2831 [ 19524 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Philip Badzuh [ pbadzuh ] |
| Sprint | Spring 7 2022 Mar 28 - Apr 8 [ 142 ] | Spring 7 2022 Mar 28 - Apr 8, Spring 8 2022 Apr 11 - Apr 22 [ 142, 143 ] |
| Rank | Ranked higher |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Philip Badzuh [ pbadzuh ] |
Step 5 of the guide here shows that a groups file may be specified to define group labels to which tracks can be assigned. These are defined at the genome level and will show up in the same sections in the UCSC genome browser.
An example of how groups can be used can be seen in the GCF_000699105.1 assembly of the Bird assemblies hub, which defines the groups in a groups.txt file, specifies the previous file in the genomes.txt file, and uses the group labels in the trackdb.txt file.