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  1. IGB
  2. IGBF-3105

Investigate: Can track hub files be categorized?

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        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          When the quickload-derived trackhub (IGBF-3066) is displayed in the UCSC genome browser, all files are displayed all together under "other". Can they be grouped by folder instead?

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              Task - A task that needs to be done. IGBF-3066 Create Track Hub for our human genome Quickload data

              • Major - Major loss of function.
              • Closed

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                pbadzuh Philip Badzuh (Inactive) added a comment -

                Step 5 of the guide here shows that a groups file may be specified to define group labels to which tracks can be assigned. These are defined at the genome level and will show up in the same sections in the UCSC genome browser.

                An example of how groups can be used can be seen in the GCF_000699105.1 assembly of the Bird assemblies hub, which defines the groups in a groups.txt file, specifies the previous file in the genomes.txt file, and uses the group labels in the trackdb.txt file.

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                pbadzuh Philip Badzuh (Inactive) added a comment - Step 5 of the guide here shows that a groups file may be specified to define group labels to which tracks can be assigned. These are defined at the genome level and will show up in the same sections in the UCSC genome browser. An example of how groups can be used can be seen in the GCF_000699105.1 assembly of the Bird assemblies hub , which defines the groups in a groups.txt file , specifies the previous file in the genomes.txt file , and uses the group labels in the trackdb.txt file .

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                  • Assignee:
                    pbadzuh Philip Badzuh (Inactive)
                    Reporter:
                    pbadzuh Philip Badzuh (Inactive)
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                    • Created:
                      Updated:
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