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  1. IGB
  2. IGBF-3106

Investigate: Is there a way to display track hub data on top of the already existing UCSC genomes?

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Currently, when opening the quickload-derived trackhub (IGBF-3066) in the UCSC genome browser, only data files belonging to that trackhub can be loaded as tracks. Is there a way to load additional files for comparative purposes and to help explore new ideas about underlying biology?

          Track hub paper: https://pubmed.ncbi.nlm.nih.gov/24227676/ (from 2014 - it's the first paper; might be a little out of date)

          Note: Review any newer articles that might add this particular feature to the Track Hub system.

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              relates to

              Task - A task that needs to be done. IGBF-3066 Create Track Hub for our human genome Quickload data

              • Major - Major loss of function.
              • Closed

                Activity

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                pbadzuh Philip Badzuh (Inactive) created issue -
                pbadzuh Philip Badzuh (Inactive) made changes -
                Field Original Value New Value
                Epic Link IGBF-2831 [ 19524 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Link This issue relates to IGBF-3066 [ IGBF-3066 ]
                ann.loraine Ann Loraine made changes -
                Description Currently, when opening the quickload-derived trackhub (IGBF-3066) in the UCSC genome browser, only data files belonging to that trackhub can be loaded as tracks. Is there a way to load additional files for comparative purposes and to help explore new ideas about underlying biology? Currently, when opening the quickload-derived trackhub (IGBF-3066) in the UCSC genome browser, only data files belonging to that trackhub can be loaded as tracks. Is there a way to load additional files for comparative purposes and to help explore new ideas about underlying biology?

                Track hub paper: https://pubmed.ncbi.nlm.nih.gov/24227676/ (from 2014 - it's the first paper; might be a little out of date)

                Note: Review any newer articles that might add this particular feature to the Track Hub system.
                ann.loraine Ann Loraine made changes -
                Rank Ranked lower
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                pbadzuh Philip Badzuh (Inactive) made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 7 2022 Mar 28 - Apr 8 [ 142 ] Spring 7 2022 Mar 28 - Apr 8, Spring 8 2022 Apr 11 - Apr 22 [ 142, 143 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                ann.loraine Ann Loraine made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                ann.loraine Ann Loraine made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                ann.loraine Ann Loraine made changes -
                Assignee Philip Badzuh [ pbadzuh ]

                  People

                  • Assignee:
                    pbadzuh Philip Badzuh (Inactive)
                    Reporter:
                    pbadzuh Philip Badzuh (Inactive)
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                    Dates

                    • Created:
                      Updated:
                      Resolved: