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  1. IGB
  2. IGBF-3106

Investigate: Is there a way to display track hub data on top of the already existing UCSC genomes?

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Description

      Currently, when opening the quickload-derived trackhub (IGBF-3066) in the UCSC genome browser, only data files belonging to that trackhub can be loaded as tracks. Is there a way to load additional files for comparative purposes and to help explore new ideas about underlying biology?

      Track hub paper: https://pubmed.ncbi.nlm.nih.gov/24227676/ (from 2014 - it's the first paper; might be a little out of date)

      Note: Review any newer articles that might add this particular feature to the Track Hub system.

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            pbadzuh Philip Badzuh (Inactive) created issue -
            pbadzuh Philip Badzuh (Inactive) made changes -
            Field Original Value New Value
            Epic Link IGBF-2831 [ 19524 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Link This issue relates to IGBF-3066 [ IGBF-3066 ]
            ann.loraine Ann Loraine made changes -
            Description Currently, when opening the quickload-derived trackhub (IGBF-3066) in the UCSC genome browser, only data files belonging to that trackhub can be loaded as tracks. Is there a way to load additional files for comparative purposes and to help explore new ideas about underlying biology? Currently, when opening the quickload-derived trackhub (IGBF-3066) in the UCSC genome browser, only data files belonging to that trackhub can be loaded as tracks. Is there a way to load additional files for comparative purposes and to help explore new ideas about underlying biology?

            Track hub paper: https://pubmed.ncbi.nlm.nih.gov/24227676/ (from 2014 - it's the first paper; might be a little out of date)

            Note: Review any newer articles that might add this particular feature to the Track Hub system.
            ann.loraine Ann Loraine made changes -
            Rank Ranked lower
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            pbadzuh Philip Badzuh (Inactive) made changes -
            Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
            ann.loraine Ann Loraine made changes -
            Sprint Spring 7 2022 Mar 28 - Apr 8 [ 142 ] Spring 7 2022 Mar 28 - Apr 8, Spring 8 2022 Apr 11 - Apr 22 [ 142, 143 ]
            ann.loraine Ann Loraine made changes -
            Rank Ranked higher
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            ann.loraine Ann Loraine made changes -
            Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
            ann.loraine Ann Loraine made changes -
            Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
            ann.loraine Ann Loraine made changes -
            Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
            ann.loraine Ann Loraine made changes -
            Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
            ann.loraine Ann Loraine made changes -
            Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
            ann.loraine Ann Loraine made changes -
            Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
            ann.loraine Ann Loraine made changes -
            Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
            ann.loraine Ann Loraine made changes -
            Resolution Done [ 10000 ]
            Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
            ann.loraine Ann Loraine made changes -
            Assignee Philip Badzuh [ pbadzuh ]

              People

              • Assignee:
                pbadzuh Philip Badzuh (Inactive)
                Reporter:
                pbadzuh Philip Badzuh (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: