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  1. IGB
  2. IGBF-3127

Version control nf-core configuration files used for rna-seq analysis

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          From Cedar W:

          Hi Ann and Robert,

          Could you please let me know where the configuration file you're using to run the nf-core rnaseq pipeline is located as well as any additional info I'd need to replicate your methods? Kelsey and I would like to process our data in parallel with Rob so that we can see how the pipeline works and make sure it's reproducible. Also, is it worthwhile to make a separate pipelines repo for this project, or is that unnecessarily complicated? I'm happy to use the file from an existing repo if that makes more sense.

          Thanks!

          Cedar

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              Task - A task that needs to be done. IGBF-3143 Run RNA-Seq data processing pipeline on positive splicing control and experimental samples

              • Major - Major loss of function.
              • Closed
              relates to

              Task - A task that needs to be done. IGBF-3143 Run RNA-Seq data processing pipeline on positive splicing control and experimental samples

              • Major - Major loss of function.
              • Closed

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                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    ann.loraine Ann Loraine
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                    • Created:
                      Updated:
                      Resolved: