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  1. IGB
  2. IGBF-3146

Remove "useq" packages from genometry bundle in IGB

        Details

        • Story Points:
          1
        • Epic Link:
        • Sprint:
          Summer 4 2022 July 4, Summer 5 2022 July 18, Summer 6 2022 Aug 1, Fall 1 2022 Aug 15

          Description

          The "useq" format is no longer being used, so far as I know. If possible, we should remove this code from the code base to avoid having to update the code to compile / run under newer JDK versions.

          See:

          core/genometry/src/main/java/com/affymetrix/genometry/parsers/useq/USeqUtilities.java

          Note that "Runtime" lines are incompatible with Java 18. See this commit for invocation of Runtime obsolete stack trace setting method.

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              relates to

              Task - A task that needs to be done. IGBF-3705 Add USEQ support back to IGB

              • Major - Major loss of function.
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                  People

                  • Assignee:
                    karthik Karthik Raveendran
                    Reporter:
                    ann.loraine Ann Loraine
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                    • Created:
                      Updated:
                      Resolved: