Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Fall 1 2022 Aug 15, Fall 2 2022 Sep 5
Description
Run the "find junctions" program to generate spreadsheets showing support for splicing events.
This program generates bed format files that tabulate evidence supporting splicing. The "score" field of the output file indicates the number sequence alignments that exhibit evidence of splicing in a particular location, called a "junction".
This format for representing splicing events comes originally from the "tophat" program, which generates "bed" files containing junctions in essentially the same way.