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  1. IGB
  2. IGBF-3172

Tabulate splicing support by running arabitag algorithm on junction and bam files

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        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          Run the arabitag algorithm to tabulate splice junction support using output from find_junctions.sh in linked issue.

          Ref: See diagram from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6589529/figure/pld3136-fig-0001/
          See paper: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6589529/

          Rice paper repository: https://bitbucket.org/lorainelab/ricealtsplice/src/master/

          Arabitag algorithm repository: https://bitbucket.org/lorainelab/altspliceanalysis/src/master/

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              Task - A task that needs to be done. IGBF-3165 Make junction files for experimental and positive control alignments data

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                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    ann.loraine Ann Loraine
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                      Updated:
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