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  1. IGB
  2. IGBF-3173

Update quickload javascript library to fix problem with page not showing

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None
    • Story Points:
      1
    • Sprint:
      Fall 2 2022 Sep 5, Fall 3 2022 Sep 26, Fall 4 2022 Oct 10, Fall 5 2022 Oct 24, Fall 6 2022 Nov 7, Fall 7 2022 Nov 21

      Description

      Our Quickload sites all use "strapdown" to present a more appealing appearance to users when they visit the Quickload sites in a Web browser.

      We have three "main" quickload sites that are provisioned onto hosts using subversion. The deployments we have currently for these are:

      Note that these sites are version-controlled using subversion (svn) on an EC2 with hostname:

      To browse the repository, visit:

      To deploy a copy of IGB quickload main (with it's styling info), use subversion as per the HEADER.md file in the "genomes/quickload" repository location:

      <h2>How to replicate this Web site</h2>
      20 <p>Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)</p>
      21 <p>
      22 The Quickload data require around 60 Gb or less.
      23 </p>
      24 <p>Install svn and check out the repository with a read-only user:</p>
      25 <p>`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`</p>
      26 <p>Place the checkedout-repository in your htdocs directory (DocumentRoot)</p>
      27 <p>Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.</p>

      Note: You don't actually have to get the entire site. You can if you want "check out" (clone) individual directories, e.g., the "style" directory.

      Here is what we "check out" when we deploy a quickload main mirror to a host:

      * [aloraine@lorainelab-quickload quickload]$ svn info
      Path: .
      Working Copy Root Path: /projects/igbquickload/lorainelab/www/main/htdocs/quickload
      URL: https://svn.bioviz.org/repos/genomes/quickload
      Repository Root: https://svn.bioviz.org/repos/genomes
      Repository UUID: 6adf4aaa-c9d1-47cf-a9da-488921ac0e0a
      Revision: 166
      Node Kind: directory
      Schedule: normal
      Last Changed Author: aloraine
      Last Changed Rev: 166
      Last Changed Date: 2022-07-06 07:47:14 -0400 (Wed, 06 Jul 2022)
      

      To "check in" your changes, you would need an account on the svn host. For this, ask AL.

      To see all the repositories used in IGB, just look at the igb preferences json file in the "igb_preferences" module. These are all present on three differents hosts - igbquickload.org host, renci host, and amazon host. Updating everything will be unfortunately a chore.

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        1. Issue.png
          Issue.png
          43 kB
        2. jserror.png
          jserror.png
          113 kB
        3. strapdown.min.v3173.js
          29 kB

          Issue Links

            Activity

            ann.loraine Ann Loraine created issue -
            ann.loraine Ann Loraine made changes -
            Field Original Value New Value
            Epic Link IGBF-1765 [ 17855 ]
            ann.loraine Ann Loraine made changes -
            Sprint Fall 2 2022 Sep 5 [ 154 ]
            karthik Karthik Raveendran made changes -
            Attachment Issue.png [ 17269 ]
            ann.loraine Ann Loraine made changes -
            Description Our Quickload sites all use "strapdown" to present a more appealing appearance to users when they visit the Quickload sites in a Web browser.

            We have three "main" quickload sites that are provisioned onto hosts using subversion. The deployments we have currently for these are:

            * http://igbquickload.org/quickload (hosted at UNCC on a VM)
            * https//quickload.bioviz.org/quickload (hosted on AWS)
            * http://lorainelab-quickload.scidas.org/quickload (hosted at RENCI / UNC Chapel Hill)

            Note that these sites are version-controlled using subversion (svn) on an EC2 with hostname:

            * https://svn.bioviz.org

            To browse the repository, visit:

            * https://svn.bioviz.org/viewvc

            To see the "code" being used to style a deployed site, go to:

            Here is what we "check out" when we deploy a quickload main mirror to a host:

            {code}
            * [aloraine@lorainelab-quickload quickload]$ svn info
            Path: .
            Working Copy Root Path: /projects/igbquickload/lorainelab/www/main/htdocs/quickload
            URL: https://svn.bioviz.org/repos/genomes/quickload
            Repository Root: https://svn.bioviz.org/repos/genomes
            Repository UUID: 6adf4aaa-c9d1-47cf-a9da-488921ac0e0a
            Revision: 166
            Node Kind: directory
            Schedule: normal
            Last Changed Author: aloraine
            Last Changed Rev: 166
            Last Changed Date: 2022-07-06 07:47:14 -0400 (Wed, 06 Jul 2022)
            {code}
            Our Quickload sites all use "strapdown" to present a more appealing appearance to users when they visit the Quickload sites in a Web browser.

            We have three "main" quickload sites that are provisioned onto hosts using subversion. The deployments we have currently for these are:

            * http://igbquickload.org/quickload (hosted at UNCC on a VM)
            * https//quickload.bioviz.org/quickload (hosted on AWS)
            * http://lorainelab-quickload.scidas.org/quickload (hosted at RENCI / UNC Chapel Hill)

            Note that these sites are version-controlled using subversion (svn) on an EC2 with hostname:

            * https://svn.bioviz.org

            To browse the repository, visit:

            * https://svn.bioviz.org/viewvc

            To deploy a copy of IGB quickload main (with it's styling info), use subversion as per the HEADER.md file in the "genomes/quickload" repository location:

            {quote}
            <h2>How to replicate this Web site</h2>
            20 <p>Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)</p>
            21 <p>
            22 The Quickload data require around 60 Gb or less.
            23 </p>
            24 <p>Install svn and check out the repository with a read-only user:</p>
            25 <p>`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`</p>
            26 <p>Place the checkedout-repository in your htdocs directory (DocumentRoot)</p>
            27 <p>Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.</p>
            {quote}

            *Note*: You don't actually have to get the entire site. You can if you want "check out" (clone) individual directories, e.g., the "style" directory.

            Here is what we "check out" when we deploy a quickload main mirror to a host:

            {code}
            * [aloraine@lorainelab-quickload quickload]$ svn info
            Path: .
            Working Copy Root Path: /projects/igbquickload/lorainelab/www/main/htdocs/quickload
            URL: https://svn.bioviz.org/repos/genomes/quickload
            Repository Root: https://svn.bioviz.org/repos/genomes
            Repository UUID: 6adf4aaa-c9d1-47cf-a9da-488921ac0e0a
            Revision: 166
            Node Kind: directory
            Schedule: normal
            Last Changed Author: aloraine
            Last Changed Rev: 166
            Last Changed Date: 2022-07-06 07:47:14 -0400 (Wed, 06 Jul 2022)
            {code}
            ann.loraine Ann Loraine made changes -
            Description Our Quickload sites all use "strapdown" to present a more appealing appearance to users when they visit the Quickload sites in a Web browser.

            We have three "main" quickload sites that are provisioned onto hosts using subversion. The deployments we have currently for these are:

            * http://igbquickload.org/quickload (hosted at UNCC on a VM)
            * https//quickload.bioviz.org/quickload (hosted on AWS)
            * http://lorainelab-quickload.scidas.org/quickload (hosted at RENCI / UNC Chapel Hill)

            Note that these sites are version-controlled using subversion (svn) on an EC2 with hostname:

            * https://svn.bioviz.org

            To browse the repository, visit:

            * https://svn.bioviz.org/viewvc

            To deploy a copy of IGB quickload main (with it's styling info), use subversion as per the HEADER.md file in the "genomes/quickload" repository location:

            {quote}
            <h2>How to replicate this Web site</h2>
            20 <p>Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)</p>
            21 <p>
            22 The Quickload data require around 60 Gb or less.
            23 </p>
            24 <p>Install svn and check out the repository with a read-only user:</p>
            25 <p>`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`</p>
            26 <p>Place the checkedout-repository in your htdocs directory (DocumentRoot)</p>
            27 <p>Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.</p>
            {quote}

            *Note*: You don't actually have to get the entire site. You can if you want "check out" (clone) individual directories, e.g., the "style" directory.

            Here is what we "check out" when we deploy a quickload main mirror to a host:

            {code}
            * [aloraine@lorainelab-quickload quickload]$ svn info
            Path: .
            Working Copy Root Path: /projects/igbquickload/lorainelab/www/main/htdocs/quickload
            URL: https://svn.bioviz.org/repos/genomes/quickload
            Repository Root: https://svn.bioviz.org/repos/genomes
            Repository UUID: 6adf4aaa-c9d1-47cf-a9da-488921ac0e0a
            Revision: 166
            Node Kind: directory
            Schedule: normal
            Last Changed Author: aloraine
            Last Changed Rev: 166
            Last Changed Date: 2022-07-06 07:47:14 -0400 (Wed, 06 Jul 2022)
            {code}
            Our Quickload sites all use "strapdown" to present a more appealing appearance to users when they visit the Quickload sites in a Web browser.

            We have three "main" quickload sites that are provisioned onto hosts using subversion. The deployments we have currently for these are:

            * http://igbquickload.org/quickload (hosted at UNCC on a VM)
            * https//quickload.bioviz.org/quickload (hosted on AWS)
            * http://lorainelab-quickload.scidas.org/quickload (hosted at RENCI / UNC Chapel Hill)

            Note that these sites are version-controlled using subversion (svn) on an EC2 with hostname:

            * https://svn.bioviz.org

            To browse the repository, visit:

            * https://svn.bioviz.org/viewvc

            To deploy a copy of IGB quickload main (with it's styling info), use subversion as per the HEADER.md file in the "genomes/quickload" repository location:

            {quote}
            <h2>How to replicate this Web site</h2>
            20 <p>Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)</p>
            21 <p>
            22 The Quickload data require around 60 Gb or less.
            23 </p>
            24 <p>Install svn and check out the repository with a read-only user:</p>
            25 <p>`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`</p>
            26 <p>Place the checkedout-repository in your htdocs directory (DocumentRoot)</p>
            27 <p>Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.</p>
            {quote}

            *Note*: You don't actually have to get the entire site. You can if you want "check out" (clone) individual directories, e.g., the "style" directory.

            Here is what we "check out" when we deploy a quickload main mirror to a host:

            {code}
            * [aloraine@lorainelab-quickload quickload]$ svn info
            Path: .
            Working Copy Root Path: /projects/igbquickload/lorainelab/www/main/htdocs/quickload
            URL: https://svn.bioviz.org/repos/genomes/quickload
            Repository Root: https://svn.bioviz.org/repos/genomes
            Repository UUID: 6adf4aaa-c9d1-47cf-a9da-488921ac0e0a
            Revision: 166
            Node Kind: directory
            Schedule: normal
            Last Changed Author: aloraine
            Last Changed Rev: 166
            Last Changed Date: 2022-07-06 07:47:14 -0400 (Wed, 06 Jul 2022)
            {code}

            To "check in" your changes, you would need an account on the svn host. For this, ask AL.
            ann.loraine Ann Loraine made changes -
            Description Our Quickload sites all use "strapdown" to present a more appealing appearance to users when they visit the Quickload sites in a Web browser.

            We have three "main" quickload sites that are provisioned onto hosts using subversion. The deployments we have currently for these are:

            * http://igbquickload.org/quickload (hosted at UNCC on a VM)
            * https//quickload.bioviz.org/quickload (hosted on AWS)
            * http://lorainelab-quickload.scidas.org/quickload (hosted at RENCI / UNC Chapel Hill)

            Note that these sites are version-controlled using subversion (svn) on an EC2 with hostname:

            * https://svn.bioviz.org

            To browse the repository, visit:

            * https://svn.bioviz.org/viewvc

            To deploy a copy of IGB quickload main (with it's styling info), use subversion as per the HEADER.md file in the "genomes/quickload" repository location:

            {quote}
            <h2>How to replicate this Web site</h2>
            20 <p>Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)</p>
            21 <p>
            22 The Quickload data require around 60 Gb or less.
            23 </p>
            24 <p>Install svn and check out the repository with a read-only user:</p>
            25 <p>`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`</p>
            26 <p>Place the checkedout-repository in your htdocs directory (DocumentRoot)</p>
            27 <p>Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.</p>
            {quote}

            *Note*: You don't actually have to get the entire site. You can if you want "check out" (clone) individual directories, e.g., the "style" directory.

            Here is what we "check out" when we deploy a quickload main mirror to a host:

            {code}
            * [aloraine@lorainelab-quickload quickload]$ svn info
            Path: .
            Working Copy Root Path: /projects/igbquickload/lorainelab/www/main/htdocs/quickload
            URL: https://svn.bioviz.org/repos/genomes/quickload
            Repository Root: https://svn.bioviz.org/repos/genomes
            Repository UUID: 6adf4aaa-c9d1-47cf-a9da-488921ac0e0a
            Revision: 166
            Node Kind: directory
            Schedule: normal
            Last Changed Author: aloraine
            Last Changed Rev: 166
            Last Changed Date: 2022-07-06 07:47:14 -0400 (Wed, 06 Jul 2022)
            {code}

            To "check in" your changes, you would need an account on the svn host. For this, ask AL.
            Our Quickload sites all use "strapdown" to present a more appealing appearance to users when they visit the Quickload sites in a Web browser.

            We have three "main" quickload sites that are provisioned onto hosts using subversion. The deployments we have currently for these are:

            * http://igbquickload.org/quickload (hosted at UNCC on a VM)
            * https//quickload.bioviz.org/quickload (hosted on AWS)
            * http://lorainelab-quickload.scidas.org/quickload (hosted at RENCI / UNC Chapel Hill)

            Note that these sites are version-controlled using subversion (svn) on an EC2 with hostname:

            * https://svn.bioviz.org

            To browse the repository, visit:

            * https://svn.bioviz.org/viewvc

            To deploy a copy of IGB quickload main (with it's styling info), use subversion as per the HEADER.md file in the "genomes/quickload" repository location:

            {quote}
            <h2>How to replicate this Web site</h2>
            20 <p>Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)</p>
            21 <p>
            22 The Quickload data require around 60 Gb or less.
            23 </p>
            24 <p>Install svn and check out the repository with a read-only user:</p>
            25 <p>`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`</p>
            26 <p>Place the checkedout-repository in your htdocs directory (DocumentRoot)</p>
            27 <p>Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.</p>
            {quote}

            *Note*: You don't actually have to get the entire site. You can if you want "check out" (clone) individual directories, e.g., the "style" directory.

            Here is what we "check out" when we deploy a quickload main mirror to a host:

            {code}
            * [aloraine@lorainelab-quickload quickload]$ svn info
            Path: .
            Working Copy Root Path: /projects/igbquickload/lorainelab/www/main/htdocs/quickload
            URL: https://svn.bioviz.org/repos/genomes/quickload
            Repository Root: https://svn.bioviz.org/repos/genomes
            Repository UUID: 6adf4aaa-c9d1-47cf-a9da-488921ac0e0a
            Revision: 166
            Node Kind: directory
            Schedule: normal
            Last Changed Author: aloraine
            Last Changed Rev: 166
            Last Changed Date: 2022-07-06 07:47:14 -0400 (Wed, 06 Jul 2022)
            {code}

            To "check in" your changes, you would need an account on the svn host. For this, ask AL.


            To see *all* the repositories used in IGB, just look at the igb preferences json file in the "igb_preferences" module.
            ann.loraine Ann Loraine made changes -
            Description Our Quickload sites all use "strapdown" to present a more appealing appearance to users when they visit the Quickload sites in a Web browser.

            We have three "main" quickload sites that are provisioned onto hosts using subversion. The deployments we have currently for these are:

            * http://igbquickload.org/quickload (hosted at UNCC on a VM)
            * https//quickload.bioviz.org/quickload (hosted on AWS)
            * http://lorainelab-quickload.scidas.org/quickload (hosted at RENCI / UNC Chapel Hill)

            Note that these sites are version-controlled using subversion (svn) on an EC2 with hostname:

            * https://svn.bioviz.org

            To browse the repository, visit:

            * https://svn.bioviz.org/viewvc

            To deploy a copy of IGB quickload main (with it's styling info), use subversion as per the HEADER.md file in the "genomes/quickload" repository location:

            {quote}
            <h2>How to replicate this Web site</h2>
            20 <p>Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)</p>
            21 <p>
            22 The Quickload data require around 60 Gb or less.
            23 </p>
            24 <p>Install svn and check out the repository with a read-only user:</p>
            25 <p>`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`</p>
            26 <p>Place the checkedout-repository in your htdocs directory (DocumentRoot)</p>
            27 <p>Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.</p>
            {quote}

            *Note*: You don't actually have to get the entire site. You can if you want "check out" (clone) individual directories, e.g., the "style" directory.

            Here is what we "check out" when we deploy a quickload main mirror to a host:

            {code}
            * [aloraine@lorainelab-quickload quickload]$ svn info
            Path: .
            Working Copy Root Path: /projects/igbquickload/lorainelab/www/main/htdocs/quickload
            URL: https://svn.bioviz.org/repos/genomes/quickload
            Repository Root: https://svn.bioviz.org/repos/genomes
            Repository UUID: 6adf4aaa-c9d1-47cf-a9da-488921ac0e0a
            Revision: 166
            Node Kind: directory
            Schedule: normal
            Last Changed Author: aloraine
            Last Changed Rev: 166
            Last Changed Date: 2022-07-06 07:47:14 -0400 (Wed, 06 Jul 2022)
            {code}

            To "check in" your changes, you would need an account on the svn host. For this, ask AL.


            To see *all* the repositories used in IGB, just look at the igb preferences json file in the "igb_preferences" module.
            Our Quickload sites all use "strapdown" to present a more appealing appearance to users when they visit the Quickload sites in a Web browser.

            We have three "main" quickload sites that are provisioned onto hosts using subversion. The deployments we have currently for these are:

            * http://igbquickload.org/quickload (hosted at UNCC on a VM)
            * https//quickload.bioviz.org/quickload (hosted on AWS)
            * http://lorainelab-quickload.scidas.org/quickload (hosted at RENCI / UNC Chapel Hill)

            Note that these sites are version-controlled using subversion (svn) on an EC2 with hostname:

            * https://svn.bioviz.org

            To browse the repository, visit:

            * https://svn.bioviz.org/viewvc

            To deploy a copy of IGB quickload main (with it's styling info), use subversion as per the HEADER.md file in the "genomes/quickload" repository location:

            {quote}
            <h2>How to replicate this Web site</h2>
            20 <p>Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)</p>
            21 <p>
            22 The Quickload data require around 60 Gb or less.
            23 </p>
            24 <p>Install svn and check out the repository with a read-only user:</p>
            25 <p>`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`</p>
            26 <p>Place the checkedout-repository in your htdocs directory (DocumentRoot)</p>
            27 <p>Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.</p>
            {quote}

            *Note*: You don't actually have to get the entire site. You can if you want "check out" (clone) individual directories, e.g., the "style" directory.

            Here is what we "check out" when we deploy a quickload main mirror to a host:

            {code}
            * [aloraine@lorainelab-quickload quickload]$ svn info
            Path: .
            Working Copy Root Path: /projects/igbquickload/lorainelab/www/main/htdocs/quickload
            URL: https://svn.bioviz.org/repos/genomes/quickload
            Repository Root: https://svn.bioviz.org/repos/genomes
            Repository UUID: 6adf4aaa-c9d1-47cf-a9da-488921ac0e0a
            Revision: 166
            Node Kind: directory
            Schedule: normal
            Last Changed Author: aloraine
            Last Changed Rev: 166
            Last Changed Date: 2022-07-06 07:47:14 -0400 (Wed, 06 Jul 2022)
            {code}

            To "check in" your changes, you would need an account on the svn host. For this, ask AL.


            To see *all* the repositories used in IGB, just look at the igb preferences json file in the "igb_preferences" module. These are all present on three differents hosts - igbquickload.org host, renci host, and amazon host. Updating everything will be unfortunately a chore.
            ann.loraine Ann Loraine made changes -
            Description Our Quickload sites all use "strapdown" to present a more appealing appearance to users when they visit the Quickload sites in a Web browser.

            We have three "main" quickload sites that are provisioned onto hosts using subversion. The deployments we have currently for these are:

            * http://igbquickload.org/quickload (hosted at UNCC on a VM)
            * https//quickload.bioviz.org/quickload (hosted on AWS)
            * http://lorainelab-quickload.scidas.org/quickload (hosted at RENCI / UNC Chapel Hill)

            Note that these sites are version-controlled using subversion (svn) on an EC2 with hostname:

            * https://svn.bioviz.org

            To browse the repository, visit:

            * https://svn.bioviz.org/viewvc

            To deploy a copy of IGB quickload main (with it's styling info), use subversion as per the HEADER.md file in the "genomes/quickload" repository location:

            {quote}
            <h2>How to replicate this Web site</h2>
            20 <p>Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)</p>
            21 <p>
            22 The Quickload data require around 60 Gb or less.
            23 </p>
            24 <p>Install svn and check out the repository with a read-only user:</p>
            25 <p>`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`</p>
            26 <p>Place the checkedout-repository in your htdocs directory (DocumentRoot)</p>
            27 <p>Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.</p>
            {quote}

            *Note*: You don't actually have to get the entire site. You can if you want "check out" (clone) individual directories, e.g., the "style" directory.

            Here is what we "check out" when we deploy a quickload main mirror to a host:

            {code}
            * [aloraine@lorainelab-quickload quickload]$ svn info
            Path: .
            Working Copy Root Path: /projects/igbquickload/lorainelab/www/main/htdocs/quickload
            URL: https://svn.bioviz.org/repos/genomes/quickload
            Repository Root: https://svn.bioviz.org/repos/genomes
            Repository UUID: 6adf4aaa-c9d1-47cf-a9da-488921ac0e0a
            Revision: 166
            Node Kind: directory
            Schedule: normal
            Last Changed Author: aloraine
            Last Changed Rev: 166
            Last Changed Date: 2022-07-06 07:47:14 -0400 (Wed, 06 Jul 2022)
            {code}

            To "check in" your changes, you would need an account on the svn host. For this, ask AL.


            To see *all* the repositories used in IGB, just look at the igb preferences json file in the "igb_preferences" module. These are all present on three differents hosts - igbquickload.org host, renci host, and amazon host. Updating everything will be unfortunately a chore.
            Our Quickload sites all use "strapdown" to present a more appealing appearance to users when they visit the Quickload sites in a Web browser.

            We have three "main" quickload sites that are provisioned onto hosts using subversion. The deployments we have currently for these are:

            * http://igbquickload.org/quickload (hosted at UNCC on a VM)
            * https://quickload.bioviz.org/quickload (hosted on AWS)
            * http://lorainelab-quickload.scidas.org/quickload (hosted at RENCI / UNC Chapel Hill)

            Note that these sites are version-controlled using subversion (svn) on an EC2 with hostname:

            * https://svn.bioviz.org

            To browse the repository, visit:

            * https://svn.bioviz.org/viewvc

            To deploy a copy of IGB quickload main (with it's styling info), use subversion as per the HEADER.md file in the "genomes/quickload" repository location:

            {quote}
            <h2>How to replicate this Web site</h2>
            20 <p>Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)</p>
            21 <p>
            22 The Quickload data require around 60 Gb or less.
            23 </p>
            24 <p>Install svn and check out the repository with a read-only user:</p>
            25 <p>`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`</p>
            26 <p>Place the checkedout-repository in your htdocs directory (DocumentRoot)</p>
            27 <p>Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.</p>
            {quote}

            *Note*: You don't actually have to get the entire site. You can if you want "check out" (clone) individual directories, e.g., the "style" directory.

            Here is what we "check out" when we deploy a quickload main mirror to a host:

            {code}
            * [aloraine@lorainelab-quickload quickload]$ svn info
            Path: .
            Working Copy Root Path: /projects/igbquickload/lorainelab/www/main/htdocs/quickload
            URL: https://svn.bioviz.org/repos/genomes/quickload
            Repository Root: https://svn.bioviz.org/repos/genomes
            Repository UUID: 6adf4aaa-c9d1-47cf-a9da-488921ac0e0a
            Revision: 166
            Node Kind: directory
            Schedule: normal
            Last Changed Author: aloraine
            Last Changed Rev: 166
            Last Changed Date: 2022-07-06 07:47:14 -0400 (Wed, 06 Jul 2022)
            {code}

            To "check in" your changes, you would need an account on the svn host. For this, ask AL.


            To see *all* the repositories used in IGB, just look at the igb preferences json file in the "igb_preferences" module. These are all present on three differents hosts - igbquickload.org host, renci host, and amazon host. Updating everything will be unfortunately a chore.
            ann.loraine Ann Loraine made changes -
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            Link This issue blocks IGBF-3144 [ IGBF-3144 ]
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            Link This issue blocks IGBF-3144 [ IGBF-3144 ]
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            Comment [ URL for the modified strapdown file in case we want to point to the URL in autoindex_strapdown.js for the various repositories:

            https://bitbucket.org/KarthikRavee91/bioviz/raw/6aa5f29fb395ca111c9fb217e0278ad5b318d5e7/htdocs/js/strapdown.min.js
            ]
            nfreese Nowlan Freese made changes -
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            karthik Karthik Raveendran made changes -
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            nfreese Nowlan Freese made changes -
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            ann.loraine Ann Loraine made changes -
            Assignee Ann Loraine [ aloraine ] Karthik Raveendran [ karthik ]
            ann.loraine Ann Loraine made changes -
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            nfreese Nowlan Freese made changes -
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            Attachment strapdown.edited.min.js [ 17451 ]
            karthik Karthik Raveendran made changes -
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            nfreese Nowlan Freese made changes -
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            karthik Karthik Raveendran made changes -
            Attachment strapdown.edited.min.js [ 17451 ]
            karthik Karthik Raveendran made changes -
            Attachment strapdown.min.v3173.js [ 17452 ]
            karthik Karthik Raveendran made changes -
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            karthik Karthik Raveendran made changes -
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            ann.loraine Ann Loraine made changes -
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            Attachment jserror.png [ 17550 ]
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            ann.loraine Ann Loraine made changes -
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            ann.loraine Ann Loraine made changes -
            Assignee Karthik Raveendran [ karthik ] Ann Loraine [ aloraine ]
            ann.loraine Ann Loraine made changes -
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            ann.loraine Ann Loraine made changes -
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            ann.loraine Ann Loraine made changes -
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            nfreese Nowlan Freese made changes -
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            ann.loraine Ann Loraine made changes -
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            karthik Karthik Raveendran made changes -
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            ann.loraine Ann Loraine made changes -
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            karthik Karthik Raveendran made changes -
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            karthik Karthik Raveendran made changes -
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            karthik Karthik Raveendran made changes -
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            karthik Karthik Raveendran made changes -
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            karthik Karthik Raveendran made changes -
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            ann.loraine Ann Loraine made changes -
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            Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
            ann.loraine Ann Loraine made changes -
            Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
            ann.loraine Ann Loraine made changes -
            Resolution Done [ 10000 ]
            Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
            ann.loraine Ann Loraine made changes -
            Assignee Karthik Raveendran [ karthik ]
            nfreese Nowlan Freese made changes -
            Link This issue relates to IGBF-3341 [ IGBF-3341 ]
            ann.loraine Ann Loraine made changes -
            Link This issue relates to IGBF-3395 [ IGBF-3395 ]

              People

              • Assignee:
                karthik Karthik Raveendran
                Reporter:
                ann.loraine Ann Loraine
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                Dates

                • Created:
                  Updated:
                  Resolved: