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  1. IGB
  2. IGBF-3185

Implement index files made public with respective bam file

    Details

    • Type: New Feature
    • Status: To-Do (View Workflow)
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Description

      Situation: When I uploaded bam files and their indexes to CyVerse/BioViz Connect and then made the bam files public, the index should have also become public automatically. See linked issue below. This does not appear to have happened.

      Task: Investigate if bam index files are automatically being made public when their respective bam file is made public. If the indexes are not becoming public, then change this ticket to a "Fix" issue and address the issue.

      Implement a change where bam index files become public when a user makes the respective bam file public in the Manage Link right panel.

        Attachments

          Issue Links

            Activity

            nfreese Nowlan Freese created issue -
            nfreese Nowlan Freese made changes -
            Field Original Value New Value
            Epic Link IGBF-2376 [ 18533 ]
            nfreese Nowlan Freese made changes -
            Link This issue relates to IGBF-1654 [ IGBF-1654 ]
            karthik Karthik Raveendran made changes -
            Link This issue blocks IGBF-1654 [ IGBF-1654 ]
            karthik Karthik Raveendran made changes -
            Link This issue relates to IGBF-1654 [ IGBF-1654 ]
            nfreese Nowlan Freese made changes -
            Status To-Do [ 10305 ] In Progress [ 3 ]
            nfreese Nowlan Freese made changes -
            Summary Investigate index files not becoming public automatically Implement index files made public with respective bam file
            nfreese Nowlan Freese made changes -
            Description Situation: When I uploaded bam files and their indexes to CyVerse/BioViz Connect and then made the bam files public, the index should have also become public automatically (see IGBF-1654). This does not appear to have happened.

            Task: Investigate if bam index files are automatically being made public when their respective bam file is made public. If the indexes are not becoming public, then change this ticket to a "Fix" issue and address the issue.
            Situation: When I uploaded bam files and their indexes to CyVerse/BioViz Connect and then made the bam files public, the index should have also become public automatically (see IGBF-1654). This does not appear to have happened.

            Task: -Investigate if bam index files are automatically being made public when their respective bam file is made public. If the indexes are not becoming public, then change this ticket to a "Fix" issue and address the issue.-
            nfreese Nowlan Freese made changes -
            Description Situation: When I uploaded bam files and their indexes to CyVerse/BioViz Connect and then made the bam files public, the index should have also become public automatically (see IGBF-1654). This does not appear to have happened.

            Task: -Investigate if bam index files are automatically being made public when their respective bam file is made public. If the indexes are not becoming public, then change this ticket to a "Fix" issue and address the issue.-
            Situation: When I uploaded bam files and their indexes to CyVerse/BioViz Connect and then made the bam files public, the index should have also become public automatically (see IGBF-1654). This does not appear to have happened.

            Task: -Investigate if bam index files are automatically being made public when their respective bam file is made public. If the indexes are not becoming public, then change this ticket to a "Fix" issue and address the issue.-

            Implement a change where bam index files become public when a user makes the respective bam file public in the Manage Link right panel.
            nfreese Nowlan Freese made changes -
            Issue Type Bug [ 1 ] New Feature [ 2 ]
            nfreese Nowlan Freese made changes -
            Sprint Fall 3 2022 Sep 26 [ 155 ]
            ann.loraine Ann Loraine made changes -
            Description Situation: When I uploaded bam files and their indexes to CyVerse/BioViz Connect and then made the bam files public, the index should have also become public automatically (see IGBF-1654). This does not appear to have happened.

            Task: -Investigate if bam index files are automatically being made public when their respective bam file is made public. If the indexes are not becoming public, then change this ticket to a "Fix" issue and address the issue.-

            Implement a change where bam index files become public when a user makes the respective bam file public in the Manage Link right panel.
            Situation: When I uploaded bam files and their indexes to CyVerse/BioViz Connect and then made the bam files public, the index should have also become public automatically. See linked issue below. (see ). This does not appear to have happened.

            Task: Investigate if bam index files are automatically being made public when their respective bam file is made public. If the indexes are not becoming public, then change this ticket to a "Fix" issue and address the issue.-

            Implement a change where bam index files become public when a user makes the respective bam file public in the Manage Link right panel.
            ann.loraine Ann Loraine made changes -
            Description Situation: When I uploaded bam files and their indexes to CyVerse/BioViz Connect and then made the bam files public, the index should have also become public automatically. See linked issue below. (see ). This does not appear to have happened.

            Task: Investigate if bam index files are automatically being made public when their respective bam file is made public. If the indexes are not becoming public, then change this ticket to a "Fix" issue and address the issue.-

            Implement a change where bam index files become public when a user makes the respective bam file public in the Manage Link right panel.
            Situation: When I uploaded bam files and their indexes to CyVerse/BioViz Connect and then made the bam files public, the index should have also become public automatically. See linked issue below. This does not appear to have happened.

            Task: Investigate if bam index files are automatically being made public when their respective bam file is made public. If the indexes are not becoming public, then change this ticket to a "Fix" issue and address the issue.

            Implement a change where bam index files become public when a user makes the respective bam file public in the Manage Link right panel.
            ann.loraine Ann Loraine made changes -
            Status In Progress [ 3 ] To-Do [ 10305 ]

              People

              • Assignee:
                Unassigned
                Reporter:
                nfreese Nowlan Freese
              • Votes:
                0 Vote for this issue
                Watchers:
                1 Start watching this issue

                Dates

                • Created:
                  Updated: