Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Fall 3 2022 Sep 26, Fall 4 2022 Oct 10, Fall 5 2022 Oct 24
Description
Situation: Testing on bvctest3.bioviz.org revealed that the Analysis Name and Output file name fields of the Analysis menu are not being autofilled correctly and are appearing blank. The Output file name should be filled with the default value provided by CyVerse (for example: FILE.bw). The Analysis Name I believe we were autofilling with "Analysis Name" though this might have been changed as the current production version of BioViz Connect is behind master.
Task: Provide the appropriate default values for the Analysis Name and Output file name fields.
Note: file extension for "bigwig" format is "bw".
Note: Default file name should resemble the input ".bam" file. For example:
- input file name: "A big old bam filewith stuff in it.sorted.awesome.bam" output file name (filled in by the interface): "A big old bam filewith stuff in it.sorted.awesome.bw"
Attachments
Issue Links
- relates to
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IGBF-3181 Change coverage graph app output to bigwig
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2376 [ 18533 ] |
| Issue Type | Task [ 3 ] | Bug [ 1 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Description |
Situation: Testing on bvctest3.bioviz.org revealed that the Analysis Name and Output file name fields of the Analysis menu are not being autofilled correctly and are appearing blank. The Output file name should be filled with the default value provided by CyVerse (for example: FILE.bigwig). The Analysis Name I believe we were autofilling with "Analysis Name" though this might have been changed as the current production version of BioViz Connect is behind master.
Task: Provide the appropriate default values for the Analysis Name and Output file name fields. |
Situation: Testing on bvctest3.bioviz.org revealed that the Analysis Name and Output file name fields of the Analysis menu are not being autofilled correctly and are appearing blank. The Output file name should be filled with the default value provided by CyVerse (for example: FILE.bw). The Analysis Name I believe we were autofilling with "Analysis Name" though this might have been changed as the current production version of BioViz Connect is behind master.
Task: Provide the appropriate default values for the Analysis Name and Output file name fields. |
| Description |
Situation: Testing on bvctest3.bioviz.org revealed that the Analysis Name and Output file name fields of the Analysis menu are not being autofilled correctly and are appearing blank. The Output file name should be filled with the default value provided by CyVerse (for example: FILE.bw). The Analysis Name I believe we were autofilling with "Analysis Name" though this might have been changed as the current production version of BioViz Connect is behind master.
Task: Provide the appropriate default values for the Analysis Name and Output file name fields. |
Situation: Testing on bvctest3.bioviz.org revealed that the Analysis Name and Output file name fields of the Analysis menu are not being autofilled correctly and are appearing blank. The Output file name should be filled with the default value provided by CyVerse (for example: FILE.bw). The Analysis Name I believe we were autofilling with "Analysis Name" though this might have been changed as the current production version of BioViz Connect is behind master.
Task: Provide the appropriate default values for the Analysis Name and Output file name fields. Note: file extension for "bigwig" format is "bw" |
| Description |
Situation: Testing on bvctest3.bioviz.org revealed that the Analysis Name and Output file name fields of the Analysis menu are not being autofilled correctly and are appearing blank. The Output file name should be filled with the default value provided by CyVerse (for example: FILE.bw). The Analysis Name I believe we were autofilling with "Analysis Name" though this might have been changed as the current production version of BioViz Connect is behind master.
Task: Provide the appropriate default values for the Analysis Name and Output file name fields. Note: file extension for "bigwig" format is "bw" |
Situation: Testing on bvctest3.bioviz.org revealed that the Analysis Name and Output file name fields of the Analysis menu are not being autofilled correctly and are appearing blank. The Output file name should be filled with the default value provided by CyVerse (for example: FILE.bw). The Analysis Name I believe we were autofilling with "Analysis Name" though this might have been changed as the current production version of BioViz Connect is behind master.
Task: Provide the appropriate default values for the Analysis Name and Output file name fields. Note: file extension for "bigwig" format is "bw". |
| Description |
Situation: Testing on bvctest3.bioviz.org revealed that the Analysis Name and Output file name fields of the Analysis menu are not being autofilled correctly and are appearing blank. The Output file name should be filled with the default value provided by CyVerse (for example: FILE.bw). The Analysis Name I believe we were autofilling with "Analysis Name" though this might have been changed as the current production version of BioViz Connect is behind master.
Task: Provide the appropriate default values for the Analysis Name and Output file name fields. Note: file extension for "bigwig" format is "bw". |
Situation: Testing on bvctest3.bioviz.org revealed that the Analysis Name and Output file name fields of the Analysis menu are not being autofilled correctly and are appearing blank. The Output file name should be filled with the default value provided by CyVerse (for example: FILE.bw). The Analysis Name I believe we were autofilling with "Analysis Name" though this might have been changed as the current production version of BioViz Connect is behind master.
Task: Provide the appropriate default values for the Analysis Name and Output file name fields. Note: file extension for "bigwig" format is "bw". Note: Default file name should resemble the input ".bam" file. For example: * input file name: "A big old bam filewith stuff in it.sorted.awesome.bam" output file name (filled in by the interface): "A big old bam filewith stuff in it.sorted.awesome.bw" |
| Sprint | Fall 3 2022 Sep 26 [ 155 ] | Fall 3 2022 Sep 26, Fall 4 2022 Oct 10 [ 155, 156 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Rank | Ranked lower |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Karthik Raveendran [ karthik ] |
| Sprint | Fall 3 2022 Sep 26, Fall 4 2022 Oct 10 [ 155, 156 ] | Fall 3 2022 Sep 26, Fall 4 2022 Oct 10, Fall 5 2022 Oct 24 [ 155, 156, 157 ] |
| Rank | Ranked higher |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Assignee | Nowlan Freese [ nfreese ] | Karthik Raveendran [ karthik ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Karthik Raveendran [ karthik ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Status | Post-merge Testing In Progress [ 10003 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Assignee | Nowlan Freese [ nfreese ] | Karthik Raveendran [ karthik ] |
| Status | Post-merge Testing In Progress [ 10003 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Assignee | Karthik Raveendran [ karthik ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Assignee | Nowlan Freese [ nfreese ] | Karthik Raveendran [ karthik ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |