Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Fall 3 2022 Sep 26, Fall 4 2022 Oct 10, Fall 5 2022 Oct 24
Description
Annotate the SL5 genes with RNA processing related functions.
Create a table that reports functions for each of the "SL" identifiers (transcript or gene name is fine)
Also, there can be a many-to-many relationship! For example, one gene or transcript (column 1) could have multiple functional assignments (column 2).
Predicted:
- SR protein annotations (most likely to be alternatively spliced in response to a treatment)
- RNA-binding proteins
- Protein components of the spliceosome
- snRNP RNAs (if possible)
References:
- Implementing a Rational and Consistent Nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR Proteins) in Plants = https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2965536/
- Gene Ontology classifications could be used, would need probably to transfer these over from previous annotation releases
Attachments
Issue Links
- blocks
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- Closed
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