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  1. IGB
  2. IGBF-3240

Modify UI for translate.bioviz.org

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: translate.bioviz.org is the domain for the API that is used to convert UCSC Track Hubs to IGB Quickloads. For example, the following URL is queried by IGB to obtain the IGB Quickload contents.txt translated from the Track Hubs hub.txt file: https://translate.bioviz.org/api/?hubUrl=https://raw.githubusercontent.com/mhalushka/miROme/main/UCSC/hub.txt&filePath=/

          The user interface for converting Track Hubs was provided by bioviz.org/trackhub-converter.html. We have decided that translate.bioviz.org should instead have the user interface for converting track hubs to IGB Quickloads. As such bioviz.org now links to translate.bioviz.org and the trackhub-converter.html page has been removed.

          Task: Migrate the trackhub converter user interface from trackhub-converter.html to translate.bioviz.org. The status page currently at translate.bioviz.org can be implemented as part of the new translate.bioviz.org or perhaps translate.bioviz.org/status. Please also include the bioviz.org menu bar as part of translate.bioviz.org.

            Attachments

            1. apacheErrorLogs.txt
              72 kB
            2. apacheLogsV2.txt
              7 kB
            3. new-ui.png
              new-ui.png
              244 kB
            4. old-ui.png
              old-ui.png
              72 kB

              Issue Links

              is blocked by

              Task - A task that needs to be done. IGBF-3187 Unify trackhub web pages

              • Major - Major loss of function.
              • Closed
              relates to

              Task - A task that needs to be done. IGBF-3260 Update ansible-playbooks/roles/settings/tasks/main.yml to configure bioviz-related variables

              • Major - Major loss of function.
              • To-Do

                Activity

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                25 older comments
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                ann.loraine Ann Loraine added a comment -

                Couple questions:

                • At what point during the operation of the application do the files "menu.css" and "menu.html" get retrieved from the external bitbucket resources? Please indicate code where this is done, if possible.
                • Under what user id is the application itself running? (maybe under the same uuid as the apache web server process ?)
                Show
                ann.loraine Ann Loraine added a comment - Couple questions: At what point during the operation of the application do the files "menu.css" and "menu.html" get retrieved from the external bitbucket resources? Please indicate code where this is done, if possible. Under what user id is the application itself running? (maybe under the same uuid as the apache web server process ?)
                Hide
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                karthik Karthik Raveendran added a comment -

                For security reasons the menu.css and menu.html files are retrieved from bioviz.org and copied to a separate folders, named common-menu.
                PR Submitted: https://bitbucket.org/lorainelab/hub-facade/pull-requests/27

                Show
                karthik Karthik Raveendran added a comment - For security reasons the menu.css and menu.html files are retrieved from bioviz.org and copied to a separate folders, named common-menu. PR Submitted: https://bitbucket.org/lorainelab/hub-facade/pull-requests/27
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                ann.loraine Ann Loraine added a comment -

                PR is merged. Ready for deployment to translate.bioviz.org.
                attn: Nowlan Freese

                Show
                ann.loraine Ann Loraine added a comment - PR is merged. Ready for deployment to translate.bioviz.org. attn: Nowlan Freese
                Hide
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                ann.loraine Ann Loraine added a comment -

                Also, PR for ansible-playbook change is now merged.

                Show
                ann.loraine Ann Loraine added a comment - Also, PR for ansible-playbook change is now merged.
                Hide
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                nfreese Nowlan Freese added a comment -

                I have run the playbook and tested on Firefox.
                The navbar links work correctly.
                No errors observed in the console.
                I was able to convert the example trackhub url and add it to IGB.

                Closing ticket.

                Show
                nfreese Nowlan Freese added a comment - I have run the playbook and tested on Firefox. The navbar links work correctly. No errors observed in the console. I was able to convert the example trackhub url and add it to IGB. Closing ticket.

                  People

                  • Assignee:
                    karthik Karthik Raveendran
                    Reporter:
                    karthik Karthik Raveendran
                  • Votes:
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                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: