Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:5
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Epic Link:
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Sprint:Spring 4 2023 Feb 21, Spring 9 2023 May 1, Summer 1 2023 May 15, Summer 2 2023 May 29, Summer 3 2023 June 12, Summer 4 2023 June 26, Summer 5 2023 July 10, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21
Description
Ann requested more space and fix to "igbquickload.org" resolution on-campus.
See attached email explaining details and work that was done on it by UNCC IT professional Michael Cowan:
Tasks:
- migrate data to the new location and test access
- create new git code repository for managing Integrated Genome Browser Quickload sites for the project
- create Web page with Javascript button users can click to add the new quickload site to IGB
References:
- Add drive to a VM w/o rebooting it: https://www.cyberciti.biz/tips/vmware-add-a-new-hard-disk-without-rebooting-guest.html
- Find out if your host is a VM: https://kb.vmware.com/s/article/1005436
- Add new disk to Linux (not necessarily a VM): https://www.tecmint.com/add-new-disk-to-an-existing-linux/
- Info about Red Hat distributions: https://access.redhat.com/articles/3078#RHEL9
Attachments
Issue Links
- relates to
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- Closed
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Activity
Something has changed. I now can log into the new VM with:
- ssh aloraine@10.16.57.232
No password required as my key is already installed in my account's "authorized hosts" file.
Commencing to replicate igbquickload.org content on the host.
Required directories:
- chipseq - DONE
- dnaseq - DONE
- quickload - DONE
- rnaseq - in progress
Interesting. File transfer rate is much faster. Now it's >150MB/s versus 20MB/s yesterday.
"rnaseq" is nearly finished. Decided to switch igbquickload.org to 152.15.236.217.
"rnaseq" is finished with the following report:
sent 45.73M bytes received 275.21G bytes 18.61M bytes/sec
total size is 572.68G speedup is 2.08
This is a little confusing because when I changed into the source directory on the RENCI host (/projects/igbquickload/lorainelab/www/main/htdocs/rnaseq) and executed "du -h", the total size of the current working directory (".") was reported as 655G. However, when I ran the same command in the target directory on the new VM (/mnt/igbdata/rnaseq), its size was reported as 534G. Why the different sizes?
Looking into it a bit more...
Set up SSL.
Closing as this is now done.
Copied blueberry data with:
data.bioviz.org root$ rsync -avzhP -e "ssh -J aloraine@hop.renci.org" aloraine@lorainelab-quickload.scidas.org:/projects/igbquickload/lorainelab/www/main/htdocs/blueberry/ blueberry
Copied soyseq data with:
rsync -avzhP -e "ssh -J aloraine@hop.renci.org" aloraine@lorainelab-quickload.scidas.org:/projects/igbquickload/lorainelab/www/main/htdocs/soyseq/ soyseq
Check the new disk with:
Check linux release:
Check linux distribution: