[IGBF-3275] Investigate the OSGI wiring issue - JIRA UNCC

Details

Type: Task
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: None
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None

Story Points:
2
Epic Link:
Run IGB in Java 21
Sprint:
Spring 4 2023 Feb 21, Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10

Description

Situation: After updating the OSGI annotations and removing bnd IGB can be built but when attempting to run the jar we are seeing the error below.

Task: Investigate the cause of the below error. Some additional context can be found in the comments of IGBF-3142

09:44:48.140 [main] ERROR com.affymetrix.main.OSGiHandler - Unable to resolve annotation-tab [2](R 2.0): missing requirement [annotation-tab [2](R 2.0)] osgi.wiring.package; (&(osgi.wiring.package=com.affymetrix.genometry.parsers)(version>=9.1.0)(!(version>=10.0.0))) [caused by: Unable to resolve genometry [30](R 30.0): missing requirement [genometry [30](R 30.0)] osgi.wiring.package; (osgi.wiring.package=com.apple.laf)] Unresolved requirements: [[annotation-tab [2](R 2.0)] osgi.wiring.package; (&(osgi.wiring.package=com.affymetrix.genometry.parsers)(version>=9.1.0)(!(version>=10.0.0)))]
org.osgi.framework.BundleException: Unable to resolve annotation-tab [2](R 2.0): missing requirement [annotation-tab [2](R 2.0)] osgi.wiring.package; (&(osgi.wiring.package=com.affymetrix.genometry.parsers)(version>=9.1.0)(!(version>=10.0.0))) [caused by: Unable to resolve genometry [30](R 30.0): missing requirement [genometry [30](R 30.0)] osgi.wiring.package; (osgi.wiring.package=com.apple.laf)] Unresolved requirements: [[annotation-tab [2](R 2.0)] osgi.wiring.package; (&(osgi.wiring.package=com.affymetrix.genometry.parsers)(version>=9.1.0)(!(version>=10.0.0)))]
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:4398)
	at org.apache.felix.framework.Felix.startBundle(Felix.java:2308)
	at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:1006)
	at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:992)
	at com.affymetrix.main.OSGiHandler.loadBundles(OSGiHandler.java:83)
	at com.affymetrix.main.OSGiHandler.startOSGi(OSGiHandler.java:63)
	at com.affymetrix.main.Main.main(Main.java:30)

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output.txt
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30/Mar/23 4:07 PM

Issue Links

relates to

IGBF-3310 Investigate com.google.guava error

Closed

IGBF-3311 Investigate org.slf4j.api error

Closed

IGBF-3307 Investigate org.apache.felix.dm error

Closed

IGBF-3308 Investigate org.apache.felix.scr error

Closed

IGBF-3309 Investigate osgi.cmpn error

Closed

IGBF-3331 Investigate com.sun.java.swing.plaf.windows requirement

Closed

IGBF-3305 Investigate com.apple.laf osgi wiring package error

Closed

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Karthik Raveendran added a comment - 03/Mar/23 6:41 PM

The error mentioned in the description is one of many similar types of errors that are triggered during run time. The errors is believed to be caused by OSGI compendium version. Upgrading the OSGI compendium to the latest releases, 6 and 7 solves the issues. However, OSGI component annotations packages does not exist and an error is thrown.

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Karthik Raveendran added a comment - 03/Mar/23 6:41 PM The error mentioned in the description is one of many similar types of errors that are triggered during run time. The errors is believed to be caused by OSGI compendium version. Upgrading the OSGI compendium to the latest releases, 6 and 7 solves the issues. However, OSGI component annotations packages does not exist and an error is thrown.

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Nowlan Freese added a comment - 10/Apr/23 3:21 PM - edited

guava: Guava was updated in the pom to Bundle-Version: 31.1.0.jre. However, Guava is unable to be resolved. The package com.google.common.util.concurrent.internal is in every error line that also mentions Guava. The com.google.common.util.concurrent.internal package is set as an Import-Package in the Guava manifest.

14:49:00.226 [main] ERROR com.affymetrix.main.OSGiHandler - Unable to resolve com.google.guava [35](R 35.0): missing requirement [com.google.guava [35](R 35.0)] osgi.wiring.package; (&(osgi.wiring.package=com.google.common.util.concurrent.internal)(version>=1.0.0)(!(version>=2.0.0))) Unresolved requirements: [[com.google.guava [35](R 35.0)] osgi.wiring.package; (&(osgi.wiring.package=com.google.common.util.concurrent.internal)(version>=1.0.0)(!(version>=2.0.0)))]

Created ticket ~~IGBF-3310~~ to address this error.

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Nowlan Freese added a comment - 10/Apr/23 3:21 PM - edited guava: Guava was updated in the pom to Bundle-Version: 31.1.0.jre. However, Guava is unable to be resolved. The package com.google.common.util.concurrent.internal is in every error line that also mentions Guava. The com.google.common.util.concurrent.internal package is set as an Import-Package in the Guava manifest. 14:49:00.226 [main] ERROR com.affymetrix.main.OSGiHandler - Unable to resolve com.google.guava [35](R 35.0): missing requirement [com.google.guava [35](R 35.0)] osgi.wiring. package ; (&(osgi.wiring. package =com.google.common.util.concurrent.internal)(version>=1.0.0)(!(version>=2.0.0))) Unresolved requirements: [[com.google.guava [35](R 35.0)] osgi.wiring. package ; (&(osgi.wiring. package =com.google.common.util.concurrent.internal)(version>=1.0.0)(!(version>=2.0.0)))] Created ticket IGBF-3310 to address this error.

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Nowlan Freese added a comment - 10/Apr/23 4:16 PM - edited

osgi.cmpn: This is interesting as the osgi.cmpn artifact version 6.0.0 was added for this branch (to match the osgi.core version 6.0.0 that replaced bndlib). The osgi.cmpn artifact is included in the master branch of IGB, but in a previous version with the artifact id org.osgi.compendium. Unclear why it is not working, but the "must.not.resolve=*" appears in every error that mentions the osgi.cmpn artifact.

14:49:00.362 [main] ERROR com.affymetrix.main.OSGiHandler - Unable to resolve osgi.cmpn [74](R 74.0): missing requirement [osgi.cmpn [74](R 74.0)] osgi.compile.time.only; (&(must.not.resolve=*)(!(must.not.resolve=*))) Unresolved requirements: [[osgi.cmpn [74](R 74.0)] osgi.compile.time.only; (&(must.not.resolve=*)(!(must.not.resolve=*)))]

Created ticket ~~IGBF-3309~~ to address this error.

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Nowlan Freese added a comment - 10/Apr/23 4:16 PM - edited osgi.cmpn: This is interesting as the osgi.cmpn artifact version 6.0.0 was added for this branch (to match the osgi.core version 6.0.0 that replaced bndlib). The osgi.cmpn artifact is included in the master branch of IGB, but in a previous version with the artifact id org.osgi.compendium. Unclear why it is not working, but the "must.not.resolve=*" appears in every error that mentions the osgi.cmpn artifact. 14:49:00.362 [main] ERROR com.affymetrix.main.OSGiHandler - Unable to resolve osgi.cmpn [74](R 74.0): missing requirement [osgi.cmpn [74](R 74.0)] osgi.compile.time.only; (&(must.not.resolve=*)(!(must.not.resolve=*))) Unresolved requirements: [[osgi.cmpn [74](R 74.0)] osgi.compile.time.only; (&(must.not.resolve=*)(!(must.not.resolve=*)))] Created ticket IGBF-3309 to address this error.

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Nowlan Freese added a comment - 10/Apr/23 4:33 PM - edited

org.apache.felix.scr: The only other bundle affected by org.apache.felix.scr is the graphTab bundle. Both bundles state that they are missing the required org.osgi.service.component.

14:49:00.346 [main] ERROR com.affymetrix.main.OSGiHandler - Unable to resolve org.apache.felix.scr [64](R 64.0): missing requirement [org.apache.felix.scr [64](R 64.0)] osgi.wiring.package; (&(osgi.wiring.package=org.osgi.service.component)(version>=1.5.0)(!(version>=1.6.0))) Unresolved requirements: [[org.apache.felix.scr [64](R 64.0)] osgi.wiring.package; (&(osgi.wiring.package=org.osgi.service.component)(version>=1.5.0)(!(version>=1.6.0)))]

Created ticket ~~IGBF-3308~~ to address this error.

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Nowlan Freese added a comment - 10/Apr/23 4:33 PM - edited org.apache.felix.scr: The only other bundle affected by org.apache.felix.scr is the graphTab bundle. Both bundles state that they are missing the required org.osgi.service.component. 14:49:00.346 [main] ERROR com.affymetrix.main.OSGiHandler - Unable to resolve org.apache.felix.scr [64](R 64.0): missing requirement [org.apache.felix.scr [64](R 64.0)] osgi.wiring. package ; (&(osgi.wiring. package =org.osgi.service.component)(version>=1.5.0)(!(version>=1.6.0))) Unresolved requirements: [[org.apache.felix.scr [64](R 64.0)] osgi.wiring. package ; (&(osgi.wiring. package =org.osgi.service.component)(version>=1.5.0)(!(version>=1.6.0)))] Created ticket IGBF-3308 to address this error.

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Nowlan Freese added a comment - 10/Apr/23 4:52 PM - edited

org.apache.felix.dm: The only remaining errors (errors are all in org.lorainelab.igb.remote.services) all have the same thing in common, a missing requirement for org.apache.felix.dm. The pom does include a dependency for org.apache.felix.dependencymanager, which seems similar. The dependencymanager dependency was updated to the most recent version.

14:49:00.356 [main] ERROR com.affymetrix.main.OSGiHandler - Unable to resolve org.lorainelab.igb.remote.services.discovery.provider.configured [70](R 70.0): missing requirement [org.lorainelab.igb.remote.services.discovery.provider.configured [70](R 70.0)] osgi.wiring.package; (&(osgi.wiring.package=org.apache.felix.dm)(version>=3.0.0)(!(version>=4.0.0))) Unresolved requirements: [[org.lorainelab.igb.remote.services.discovery.provider.configured [70](R 70.0)] osgi.wiring.package; (&(osgi.wiring.package=org.apache.felix.dm)(version>=3.0.0)(!(version>=4.0.0)))]

Created ticket ~~IGBF-3307~~ to address this error.

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Nowlan Freese added a comment - 10/Apr/23 4:52 PM - edited org.apache.felix.dm: The only remaining errors (errors are all in org.lorainelab.igb.remote.services) all have the same thing in common, a missing requirement for org.apache.felix.dm. The pom does include a dependency for org.apache.felix.dependencymanager, which seems similar. The dependencymanager dependency was updated to the most recent version. 14:49:00.356 [main] ERROR com.affymetrix.main.OSGiHandler - Unable to resolve org.lorainelab.igb.remote.services.discovery.provider.configured [70](R 70.0): missing requirement [org.lorainelab.igb.remote.services.discovery.provider.configured [70](R 70.0)] osgi.wiring. package ; (&(osgi.wiring. package =org.apache.felix.dm)(version>=3.0.0)(!(version>=4.0.0))) Unresolved requirements: [[org.lorainelab.igb.remote.services.discovery.provider.configured [70](R 70.0)] osgi.wiring. package ; (&(osgi.wiring. package =org.apache.felix.dm)(version>=3.0.0)(!(version>=4.0.0)))] Created ticket IGBF-3307 to address this error.

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Nowlan Freese added a comment - 11/Apr/23 10:01 AM

We have created tickets for each error we are seeing in the attached output.txt file: IGBF-3302, ~~IGBF-3305~~, ~~IGBF-3307~~, ~~IGBF-3308~~, ~~IGBF-3309~~, ~~IGBF-3310~~, ~~IGBF-3311~~.

Closing ticket.

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Nowlan Freese added a comment - 11/Apr/23 10:01 AM We have created tickets for each error we are seeing in the attached output.txt file: IGBF-3302, IGBF-3305 , IGBF-3307 , IGBF-3308 , IGBF-3309 , IGBF-3310 , IGBF-3311 . Closing ticket.

Investigate the OSGI wiring issue

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