Nowlan Freese added a comment - 20/Apr/23 12:32 PM guava manifest: Manifest-Version: 1.0 Automatic-Module-Name: com.google.common Bnd-LastModified: 1646083102234 Build-Jdk: 11.0.12 Built-By: cpovirk Bundle-Description: Guava is a suite of core and expanded libraries that include utility classes, Google's collections, I/O classes, and much more. Bundle-DocURL: https: //github.com/google/guava/ Bundle-License: http: //www.apache.org/licenses/LICENSE-2.0.txt Bundle-ManifestVersion: 2 Bundle-Name: Guava: Google Core Libraries for Java Bundle-SymbolicName: com.google.guava Bundle-Version: 31.1.0.jre Created-By: Apache Maven Bundle Plugin Export-Package: com.google.common.annotations;version= "31.1.0" ,com.googl e.common.base;version= "31.1.0" ;uses:= "javax.annotation" ,com.google.comm on.cache;version= "31.1.0" ;uses:="com.google.common.base,com.google.comm on.collect,com.google.common.util.concurrent,javax.annotation",com.goog le.common.collect;version= "31.1.0" ;uses:="com.google.common.base,javax. annotation ",com.google.common.escape;version=" 31.1.0 ";uses:=" com.google .common.base,javax.annotation ",com.google.common.eventbus;version=" 31.1 .0 ",com.google.common.graph;version=" 31.1.0 ";uses:=" com.google.common.c ollect,javax.annotation ",com.google.common.hash;version=" 31.1.0";uses:= "com.google.common.base,javax.annotation" ,com.google.common.html;versio n= "31.1.0" ;uses:= "com.google.common.escape" ,com.google.common.io;versio n= "31.1.0" ;uses:="com.google.common.base,com.google.common.collect,com. google.common.graph,com.google.common.hash,javax.annotation",com.google .common.math;version= "31.1.0" ;uses:= "javax.annotation" ,com.google.commo n.net;version= "31.1.0" ;uses:="com.google.common.base,com.google.common. collect,com.google.common.escape,javax.annotation",com.google.common.pr imitives;version= "31.1.0" ;uses:="com.google.common.base,javax.annotatio n ",com.google.common.reflect;version=" 31.1.0 ";uses:=" com.google.common. collect,com.google.common.io,javax.annotation",com.google.common.util.c oncurrent;version= "31.1.0" ;uses:="com.google.common.base,com.google.com mon.collect,com.google.common.util.concurrent.internal,javax.annotation ",com.google.common.xml;version=" 31.1.0 ";uses:=" com.google.common.escap e" Import-Package: com.google.common.util.concurrent.internal;version="[1.0 ,2) ",javax.annotation;resolution:=optional;version=" [3.0,4)",javax.cryp to;resolution:=optional,javax.crypto.spec;resolution:=optional,sun.misc ;resolution:=optional Require-Capability: osgi.ee;filter:= "(&(osgi.ee=JavaSE)(version=1.8))" Tool: Bnd-2.3.0.201405100607

Nowlan Freese added a comment - 20/Apr/23 1:15 PM - edited It looks like there are additional requirements for using guava versions >= 27.01: Guava documentation Discussion about additional requirements for guava here and here OpenCast updating guava Backing guava down to version 27.0-jre removes the guava errors, but this version does have reported vulnerabilities.

Nowlan Freese added a comment - 21/Apr/23 12:23 PM In order to update the guava version to 31.1-jre we needed to also add the guava dependency failureaccess . Adding the failureaccess artifact to the project pom and the main pom worked correctly for the IGBF-3275 branch on Java 11. Java 11 commit: https://bitbucket.org/nfreese/nowlanfork-igb/commits/083548ee69a98176dfde7090eee186f2890b3b09 To test, pull latest changes from my IGBF-3275 branch, build IGB (mvn clean install) and then run the jar, there should be no errors related to com.google.guava. I also tested updating guava on the IGB master branch. IGB built and ran correctly. Java 8 commit: https://bitbucket.org/nfreese/nowlanfork-igb/commits/f2c177b645efbdfaa040901ca775238b4b8c57c3 To test, download my IGBF-3310 installer , install and run IGB, and look for IGB to run correctly with no errors in the log.

Ann Loraine added a comment - 27/Apr/23 12:27 PM Downloaded and installed 3310 installer as advised. Opened latest human genome and observed no errors in log. Moving to "ready for PR"

Nowlan Freese added a comment - 27/Apr/23 1:07 PM Pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/925

Ann Loraine added a comment - 27/Apr/23 3:19 PM Master branch installers are built and deployed to the downloads section of the team repository. Ready for testing.