Pulled recent merge to my fork and tested files on my local machine. I configured the local URL in IGB and visualized the the first file of each folder in Stigma Style on my new server. Everything loaded properly and was visually correct.

Would you like to test updated files in IGB as well? [~aloraine]

The newest PR target the genome browser visualization repository is now merged and ready for testing.

Testing:

• Terminal: Make sure that main repos are cloned for sample_sheets or added to genome-browser-visualization folder.

  cd molly-genome-browser-visualization/
  export PYTHONPATH=/Users/mollydavis333/Desktop/igbquickload
  ./makeAnnotsXml.py
  git status
  

• Opened and viewed in IGB:
  URL add data source: file: /Users/mollydavis333/Desktop/molly-genome-browser-visualization/quickload
  Name: Stigma Style
  Links work and I can load all of the data

Ready to commit updated "annots.xml" file in genome-browser-visualization:

Branch: https://bitbucket.org/mdavis4290/molly-genome-browser-visualization/branch/IGBF-3326
Pull Request: https://bitbucket.org/hotpollen/genome-browser-visualization/pull-requests/4

Attn [~molly] : I'm not sure where this ticket should go next. Let's discuss.

I merged the PR.

To test:

• Run "makeAnnotsXml.py" from the genome browser visualization repository bitbucket hotpollen repository to rebuild the Quickload files
• Add the local clone of the genome browser visualization repository's "quickload" folder as a new data source in IGB
• Open the tomato SL5 genome in IGB
• Look at the Data Access file and folder tree in the Data Access Panel of IGB
• Check that there is a "pistil" folder in the file and folder tree in IGB (see previous comments for notes on what the folders and files should be named)