[IGBF-3338] Add and test KP 2023 sample sheet data to "hotpollen" annots.xml - JIRA UNCC

Details

Type: Task
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: None
Labels:
None

Story Points:
0.5
Epic Link:
Process and deploy Palanivelu Lab data
Sprint:
Summer 1 2023 May 15

Description

Directory: ../genome-browser-visualization/makeAnnotsXml.py

def readSpreadsheet5(fname="../pistil-rna-seq/ExternalData/KP_sample_sheet.xlsx"):
    if fname:
        return pd.read_excel(fname)
    else:
        repo = "https://bitbucket.org/hotpollen/pistil-rna-seq"
        branch = "main"
        filename = "KP_sample_sheet.xlsx"
        path = "ExternalDataSets/"+filename
        getSampleSheetFromRepo(filename,repo,path,branch)
        return pd.read_excel(filename)

Attachments

Issue Links

relates to

IGBF-3326 Create KP 2023 sample sheet needed for Quickload site and more

Closed

Activity

Ascending order - Click to sort in descending order

Molly Davis created issue - 15/May/23 10:20 AM

Molly Davis made changes - 15/May/23 10:20 AM

Field	Original Value	New Value
Epic Link		IGBF-3251 [ 22132 ]

Molly Davis made changes - 15/May/23 10:20 AM

Link

This issue relates to ~~IGBF-3326~~ [ ~~IGBF-3326~~ ]

Molly Davis made changes - 15/May/23 10:20 AM

Assignee

Ann Loraine [ aloraine ]

Molly Davis [ molly ]

Molly Davis made changes - 15/May/23 10:21 AM

Summary

Add KP sample sheet data to "hotpollen" annots.xml

Add and test KP sample sheet data to "hotpollen" annots.xml

Molly Davis made changes - 15/May/23 11:19 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Molly Davis made changes - 19/May/23 9:58 AM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Molly Davis made changes - 19/May/23 9:58 AM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Molly Davis made changes - 19/May/23 9:58 AM

Status

First Level Review in Progress [ 10301 ]

Ready for Pull Request [ 10304 ]

Molly Davis made changes - 19/May/23 9:58 AM

Status

Ready for Pull Request [ 10304 ]

Pull Request Submitted [ 10101 ]

Molly Davis made changes - 19/May/23 9:58 AM

Status

Pull Request Submitted [ 10101 ]

Reviewing Pull Request [ 10303 ]

Molly Davis made changes - 19/May/23 9:58 AM

Status

Reviewing Pull Request [ 10303 ]

Merged Needs Testing [ 10002 ]

Molly Davis made changes - 19/May/23 9:58 AM

Assignee

Molly Davis [ molly ]

Ann Loraine made changes - 19/May/23 10:12 AM

Status

Merged Needs Testing [ 10002 ]

Post-merge Testing In Progress [ 10003 ]

Ann Loraine made changes - 19/May/23 10:12 AM

Status

Post-merge Testing In Progress [ 10003 ]

To-Do [ 10305 ]

Ann Loraine made changes - 19/May/23 10:13 AM

Assignee

Molly Davis [ molly ]

Molly Davis made changes - 19/May/23 11:44 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Molly Davis made changes - 19/May/23 11:44 AM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Molly Davis made changes - 19/May/23 11:44 AM

Assignee

Molly Davis [ molly ]

Molly Davis made changes - 22/May/23 10:07 AM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Molly Davis made changes - 22/May/23 10:07 AM

Status

First Level Review in Progress [ 10301 ]

Ready for Pull Request [ 10304 ]

Molly Davis made changes - 22/May/23 10:07 AM

Status

Ready for Pull Request [ 10304 ]

Pull Request Submitted [ 10101 ]

Molly Davis made changes - 22/May/23 10:07 AM

Status

Pull Request Submitted [ 10101 ]

Reviewing Pull Request [ 10303 ]

Molly Davis made changes - 22/May/23 10:08 AM

Status

Reviewing Pull Request [ 10303 ]

Pull Request Submitted [ 10101 ]

Ann Loraine made changes - 22/May/23 10:38 AM

Status

Pull Request Submitted [ 10101 ]

Reviewing Pull Request [ 10303 ]

Ann Loraine made changes - 22/May/23 10:38 AM

Status

Reviewing Pull Request [ 10303 ]

Merged Needs Testing [ 10002 ]

Molly Davis made changes - 22/May/23 11:21 AM

Assignee

Molly Davis [ molly ]

Molly Davis made changes - 22/May/23 11:27 AM

Assignee

Molly Davis [ molly ]

Molly Davis made changes - 22/May/23 11:28 AM

Status

Merged Needs Testing [ 10002 ]

Post-merge Testing In Progress [ 10003 ]

Molly Davis made changes - 22/May/23 11:28 AM

Status

Post-merge Testing In Progress [ 10003 ]

To-Do [ 10305 ]

Molly Davis made changes - 22/May/23 11:28 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Molly Davis made changes - 22/May/23 11:28 AM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Molly Davis made changes - 22/May/23 11:28 AM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Molly Davis made changes - 22/May/23 11:28 AM

Status

First Level Review in Progress [ 10301 ]

Ready for Pull Request [ 10304 ]

Molly Davis made changes - 22/May/23 11:28 AM

Status

Ready for Pull Request [ 10304 ]

Pull Request Submitted [ 10101 ]

Molly Davis made changes - 22/May/23 11:28 AM

Status

Pull Request Submitted [ 10101 ]

Reviewing Pull Request [ 10303 ]

Molly Davis made changes - 22/May/23 11:28 AM

Status

Reviewing Pull Request [ 10303 ]

Merged Needs Testing [ 10002 ]

Molly Davis made changes - 24/May/23 9:38 AM

Status

Merged Needs Testing [ 10002 ]

Post-merge Testing In Progress [ 10003 ]

Molly Davis made changes - 24/May/23 9:38 AM

Status

Post-merge Testing In Progress [ 10003 ]

To-Do [ 10305 ]

Molly Davis made changes - 24/May/23 9:38 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Molly Davis made changes - 24/May/23 9:38 AM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Molly Davis made changes - 24/May/23 9:38 AM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Molly Davis made changes - 24/May/23 9:38 AM

Status

First Level Review in Progress [ 10301 ]

Ready for Pull Request [ 10304 ]

Molly Davis made changes - 24/May/23 9:38 AM

Status

Ready for Pull Request [ 10304 ]

Pull Request Submitted [ 10101 ]

Molly Davis made changes - 25/May/23 9:44 AM

Status

Pull Request Submitted [ 10101 ]

Reviewing Pull Request [ 10303 ]

Molly Davis made changes - 25/May/23 9:44 AM

Status

Reviewing Pull Request [ 10303 ]

Merged Needs Testing [ 10002 ]

Molly Davis made changes - 25/May/23 9:44 AM

Status

Merged Needs Testing [ 10002 ]

Post-merge Testing In Progress [ 10003 ]

Molly Davis made changes - 25/May/23 9:44 AM

Status

Post-merge Testing In Progress [ 10003 ]

Merged Needs Testing [ 10002 ]

Molly Davis made changes - 25/May/23 10:17 AM

Status

Merged Needs Testing [ 10002 ]

Post-merge Testing In Progress [ 10003 ]

Molly Davis made changes - 25/May/23 10:17 AM

Resolution		Done [ 10000 ]
Status	Post-merge Testing In Progress [ 10003 ]	Closed [ 6 ]

Molly Davis made changes - 27/Jul/23 4:33 PM

Summary

Add and test KP sample sheet data to "hotpollen" annots.xml

Add and test KP 2023 sample sheet data to "hotpollen" annots.xml

People

Assignee:

Unassigned

Reporter:

Molly Davis

Votes:

0 Vote for this issue

Watchers:

2 Start watching this issue

Dates

Created:

15/May/23 10:20 AM

Updated:

27/Jul/23 4:33 PM

Resolved:

25/May/23 10:17 AM