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  1. IGB
  2. IGBF-3338

Add and test KP 2023 sample sheet data to "hotpollen" annots.xml

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Directory: ../genome-browser-visualization/makeAnnotsXml.py

          def readSpreadsheet5(fname="../pistil-rna-seq/ExternalData/KP_sample_sheet.xlsx"):
    if fname:
        return pd.read_excel(fname)
    else:
        repo = "https://bitbucket.org/hotpollen/pistil-rna-seq"
        branch = "main"
        filename = "KP_sample_sheet.xlsx"
        path = "ExternalDataSets/"+filename
        getSampleSheetFromRepo(filename,repo,path,branch)
        return pd.read_excel(filename)

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              relates to

              Task - A task that needs to be done. IGBF-3326 Create KP 2023 sample sheet needed for Quickload site and more

              • Major - Major loss of function.
              • Closed

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                  • Assignee:
                    Unassigned
                    Reporter:
                    Mdavis4290 Molly Davis
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                    • Created:
                      Updated:
                      Resolved: