Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Sprint:Fall 2 2023 Sep 17, Fall 3 2023 Oct 2
Description
We observed from previous work that VF36 and F3H are very similar with respect to gene expression patterns. To understand how the are mutant differs from wild-type, we will focus on comparing the are mutant to the VF36 cultivar.
Goal: Find and interpret how gene expression in are differs from gene expression in VF36
Rationale: Based on past PCA and MDS plot analysis, we hypothesize there will many genes with expression differences between ARE and VF36. And yet, as far as we know, ARE is nothing but VF36 with a single point mutation in the F3H gene. Why so many differences in expression?
Strategy:
Create Markdown that perform differential analysis comparing are to VF36 within the control 28 degree temperature and under one time.