[IGBF-3349] Remove guava (google) upper bound version requirement for ProtAnnot - JIRA UNCC

Details

Type: Task
Status: Closed (View Workflow)
Priority: Blocker
Resolution: Done
Affects Version/s: None
Fix Version/s: None
Labels:
None

Story Points:
3
Epic Link:
Build & maintain IGB Apps
Sprint:
Summer 2 2023 May 29, Summer 4 2023 June 26, Summer 5 2023 July 10, Summer 6 2023 July 24, Summer 7 2023 Aug 7

Description

com.google.common.base;version="\"[16.0,17)\"",
com.google.common.collect;version="\"[16.0,17)\"",
com.google.common.eventbus;version="\"[16.0,17)\"",

This prevents ProtAnnot from appearing in the IGB app store while running the current version of master.

Task: Update/Release a new version of Protannot that can use the newer version of com.google.guava. If possible, set it so that Protannot is not dependent on a specific version of com.google.guava.

Attachments

Issue Links

blocks

IGBF-3380 Deploy ProtAnnot 9.1.4 to App Store.

Closed

relates to

IGBF-3381 Investigate: ProtAnnot can no longer query InterProScan

Closed

IGBF-3394 Refactor SNP file converter plugin

Closed

IGBF-3310 Investigate com.google.guava error

Closed

Activity

Ascending order - Click to sort in descending order

Nowlan Freese created issue - 30/May/23 10:49 AM

Nowlan Freese made changes - 30/May/23 10:49 AM

Field	Original Value	New Value
Epic Link		IGBF-1908 [ 17998 ]

Nowlan Freese made changes - 30/May/23 10:49 AM

Link

This issue relates to ~~IGBF-3310~~ [ ~~IGBF-3310~~ ]

Ann Loraine made changes - 12/Jun/23 11:14 AM

Sprint

Summer 2 2023 May 29 [ 171 ]

Summer 2 2023 May 29, Summer 3 2023 June 12 [ 171, 172 ]

Ann Loraine made changes - 12/Jun/23 11:14 AM

Rank

Ranked higher

Ann Loraine made changes - 20/Jun/23 10:09 AM

Sprint

Summer 2 2023 May 29, Summer 3 2023 June 12 [ 171, 172 ]

Summer 2 2023 May 29, Summer 4 2023 June 26 [ 171, 173 ]

Nowlan Freese made changes - 26/Jun/23 10:52 AM

Assignee

Kaushik Gopu [ kgopu ]

Nowlan Freese made changes - 07/Jul/23 10:30 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Ann Loraine made changes - 07/Jul/23 11:11 AM

Link

This issue blocks ~~IGBF-3380~~ [ ~~IGBF-3380~~ ]

Ann Loraine made changes - 10/Jul/23 10:02 AM

Sprint

Summer 2 2023 May 29, Summer 4 2023 June 26 [ 171, 173 ]

Summer 2 2023 May 29, Summer 4 2023 June 26, Summer 5 2023 July 10 [ 171, 173, 174 ]

Ann Loraine made changes - 10/Jul/23 10:02 AM

Rank

Ranked higher

Nowlan Freese made changes - 12/Jul/23 10:11 AM

Status

In Progress [ 3 ]

To-Do [ 10305 ]

Nowlan Freese made changes - 20/Jul/23 10:58 AM

Description

Situation: As part of ~~IGBF-3310~~ we updated the com.google.guava dependency on IGB master to a newer version (31.1-jre) as the newer version does not have a known vulnerability. However, the Protannot manifest currently specifies an Import-Package for:
{code}
com.google.common.base;version="[16.0,1
7)"
{code}
This prevents ProtAnnot from appearing in the IGB app store while running the current version of master.

Task: Update/Release a new version of Protannot that can use the newer version of com.google.guava. If possible, set it so that Protannot is not dependent on a specific version of com.google.guava.

Situation: As part of ~~IGBF-3310~~ we updated the com.google.guava dependency on IGB master to a newer version (32.1.1-jre) as the newer version does not have a known vulnerability. However, the Protannot manifest currently specifies an Import-Package for:
{code}
com.google.common.base;version="\"[16.0,17)\"",
com.google.common.collect;version="\"[16.0,17)\"",
com.google.common.eventbus;version="\"[16.0,17)\"",
{code}
This prevents ProtAnnot from appearing in the IGB app store while running the current version of master.

Task: Update/Release a new version of Protannot that can use the newer version of com.google.guava. If possible, set it so that Protannot is not dependent on a specific version of com.google.guava.

Ann Loraine made changes - 20/Jul/23 11:55 AM

Story Points

Nowlan Freese made changes - 24/Jul/23 10:11 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Ann Loraine made changes - 24/Jul/23 10:29 AM

Sprint

Summer 2 2023 May 29, Summer 4 2023 June 26, Summer 5 2023 July 10 [ 171, 173, 174 ]

Summer 2 2023 May 29, Summer 4 2023 June 26, Summer 5 2023 July 10, Summer 6 2023 July 24 [ 171, 173, 174, 175 ]

Ann Loraine made changes - 24/Jul/23 10:29 AM

Rank

Ranked higher

Kaushik Gopu made changes - 25/Jul/23 11:49 AM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Ann Loraine made changes - 25/Jul/23 12:34 PM

Assignee

Kaushik Gopu [ kgopu ]

Ann Loraine [ aloraine ]

Ann Loraine made changes - 25/Jul/23 12:35 PM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Ann Loraine made changes - 25/Jul/23 12:43 PM

Assignee

Ann Loraine [ aloraine ]

Ann Loraine made changes - 25/Jul/23 12:43 PM

Status

First Level Review in Progress [ 10301 ]

Needs 1st Level Review [ 10005 ]

Ann Loraine made changes - 25/Jul/23 2:02 PM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Ann Loraine made changes - 25/Jul/23 2:02 PM

Assignee

Ann Loraine [ aloraine ]

Ann Loraine made changes - 25/Jul/23 2:06 PM

Status

First Level Review in Progress [ 10301 ]

To-Do [ 10305 ]

Ann Loraine made changes - 25/Jul/23 2:06 PM

Assignee

Ann Loraine [ aloraine ]

Kaushik Gopu [ kgopu ]

Kaushik Gopu made changes - 26/Jul/23 10:01 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Kaushik Gopu made changes - 26/Jul/23 10:01 AM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Kaushik Gopu made changes - 26/Jul/23 10:02 AM

Assignee

Kaushik Gopu [ kgopu ]

Ann Loraine made changes - 27/Jul/23 10:02 AM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Ann Loraine made changes - 27/Jul/23 10:02 AM

Assignee

Ann Loraine [ aloraine ]

Ann Loraine made changes - 27/Jul/23 10:04 AM

Status

First Level Review in Progress [ 10301 ]

Needs 1st Level Review [ 10005 ]

Ann Loraine made changes - 27/Jul/23 10:04 AM

Assignee

Ann Loraine [ aloraine ]

Nowlan Freese [ nfreese ]

Ann Loraine made changes - 27/Jul/23 10:14 AM

Link

This issue relates to ~~IGBF-3381~~ [ ~~IGBF-3381~~ ]

Nowlan Freese made changes - 27/Jul/23 11:34 AM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Nowlan Freese made changes - 27/Jul/23 12:54 PM

Assignee

Nowlan Freese [ nfreese ]

Kaushik Gopu [ kgopu ]

Nowlan Freese made changes - 27/Jul/23 12:54 PM

Status

First Level Review in Progress [ 10301 ]

To-Do [ 10305 ]

Nowlan Freese made changes - 27/Jul/23 4:13 PM

Link

This issue relates to ~~IGBF-3394~~ [ ~~IGBF-3394~~ ]

Kaushik Gopu made changes - 27/Jul/23 4:59 PM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Kaushik Gopu made changes - 27/Jul/23 4:59 PM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Nowlan Freese made changes - 28/Jul/23 8:53 AM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Nowlan Freese made changes - 28/Jul/23 8:54 AM

Assignee

Kaushik Gopu [ kgopu ]

Nowlan Freese [ nfreese ]

Nowlan Freese made changes - 28/Jul/23 9:26 AM

Assignee

Nowlan Freese [ nfreese ]

Kaushik Gopu [ kgopu ]

Nowlan Freese made changes - 28/Jul/23 9:26 AM

Status

First Level Review in Progress [ 10301 ]

Ready for Pull Request [ 10304 ]

Kaushik Gopu made changes - 31/Jul/23 5:16 PM

Assignee

Kaushik Gopu [ kgopu ]

Nowlan Freese made changes - 01/Aug/23 12:39 PM

Status

Ready for Pull Request [ 10304 ]

Pull Request Submitted [ 10101 ]

Ann Loraine made changes - 07/Aug/23 10:16 AM

Sprint

Summer 2 2023 May 29, Summer 4 2023 June 26, Summer 5 2023 July 10, Summer 6 2023 July 24 [ 171, 173, 174, 175 ]

Summer 2 2023 May 29, Summer 4 2023 June 26, Summer 5 2023 July 10, Summer 6 2023 July 24, Summer 7 2023 Aug 7 [ 171, 173, 174, 175, 176 ]

Ann Loraine made changes - 07/Aug/23 10:16 AM

Rank

Ranked higher

Ann Loraine made changes - 07/Aug/23 10:19 AM

Summary

Update ProtAnnot for new Google version

Make ProtAnnot specify a single version for "guava" artifact from google

Ann Loraine made changes - 07/Aug/23 10:20 AM

Summary

Make ProtAnnot specify a single version for "guava" artifact from google

Remove guava (google) upper bound version requirement for ProtAnnot

Ann Loraine made changes - 07/Aug/23 10:28 AM

Status

Pull Request Submitted [ 10101 ]

Reviewing Pull Request [ 10303 ]

Ann Loraine made changes - 07/Aug/23 10:28 AM

Status

Reviewing Pull Request [ 10303 ]

Merged Needs Testing [ 10002 ]

Nowlan Freese made changes - 07/Aug/23 2:22 PM

Assignee

Kaushik Gopu [ kgopu ]

Nowlan Freese made changes - 07/Aug/23 2:22 PM

Status

Merged Needs Testing [ 10002 ]

Post-merge Testing In Progress [ 10003 ]

Nowlan Freese made changes - 07/Aug/23 2:22 PM

Resolution		Done [ 10000 ]
Status	Post-merge Testing In Progress [ 10003 ]	Closed [ 6 ]

People

Assignee:

Kaushik Gopu

Reporter:

Nowlan Freese

Votes:

0 Vote for this issue

Watchers:

3 Start watching this issue

Dates

Created:

30/May/23 10:49 AM

Updated:

07/Aug/23 2:22 PM

Resolved:

07/Aug/23 2:22 PM