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  1. IGB
  2. IGBF-3356

Revise edgeR differential expression code to output results tables

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          The current version does not write out DE gene results. Also, the name of the file is not specific enough.

          For this task:

          • Change name of FindDifferentiallyExpressedGenes.Rmd (and its knitted .PDF) to: FindControlVsStressDEGenes-edgeR.Rmd
          • Write out a consolidated .txt file reporting differential expression results

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              relates to

              Task - A task that needs to be done. IGBF-3342 Create scaled counts file for Muday analysis

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3355 Create Markdown consolidating DESeq treatment vs control analysis

              • Major - Major loss of function.
              • Closed

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                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    ann.loraine Ann Loraine
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                    • Created:
                      Updated:
                      Resolved: