[IGBF-3365] Prepping data and entries for SRA for Ravi / Kelsey data - JIRA UNCC

Details

Type: Task
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: None
Labels:
None

Story Points:
3
Epic Link:
Support NSF pollen grant
Sprint:
Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 6, Fall 7, Spring 1, Spring 2

Description

Prepare the sequence data from the 3 separate sequencing runs.

Rename the sequencing files to match the single letter coding format like we use in the Muday time course.

Create a Biosample Spreadsheet.
Create an SRA spread sheet.

Figure out what aspects of this project that require different entries compared to the Muday and Johnson projects.

Attachments

Issue Links

relates to

IGBF-3498 Review SRA Submissions

Closed

Activity

Ascending order - Click to sort in descending order

Robert Reid created issue - 14/Jun/23 1:21 PM

Robert Reid made changes - 14/Jun/23 1:21 PM

Field	Original Value	New Value
Epic Link		IGBF-2993 [ 21429 ]

Robert Reid made changes - 20/Jun/23 11:14 AM

Sprint

Summer 4 2023 June 26 [ 173 ]

Summer 3 2023 June 12 [ 172 ]

Robert Reid made changes - 20/Jun/23 11:14 AM

Rank

Ranked lower

Robert Reid made changes - 20/Jun/23 11:15 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Ann Loraine made changes - 26/Jun/23 9:59 AM

Sprint

Summer 3 2023 June 12 [ 172 ]

Summer 3 2023 June 12, Summer 4 2023 June 26 [ 172, 173 ]

Ann Loraine made changes - 26/Jun/23 9:59 AM

Rank

Ranked higher

Ann Loraine made changes - 07/Jul/23 11:03 AM

Sprint

Summer 3 2023 June 12, Summer 4 2023 June 26 [ 172, 173 ]

Summer 3 2023 June 12, Summer 6 2023 July 24 [ 172, 175 ]

Ann Loraine made changes - 07/Aug/23 10:16 AM

Sprint

Summer 3 2023 June 12, Summer 6 2023 July 24 [ 172, 175 ]

Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7 [ 172, 175, 176 ]

Ann Loraine made changes - 07/Aug/23 10:16 AM

Rank

Ranked higher

Robert Reid made changes - 07/Aug/23 12:59 PM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Molly Davis made changes - 08/Aug/23 10:16 AM

Assignee

Robert Reid [ robertreid ]

Molly Davis [ molly ]

Molly Davis made changes - 08/Aug/23 2:40 PM

Assignee

Molly Davis [ molly ]

Nowlan Freese [ nfreese ]

Nowlan Freese made changes - 09/Aug/23 1:11 PM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Nowlan Freese made changes - 09/Aug/23 1:13 PM

Status

First Level Review in Progress [ 10301 ]

Needs 1st Level Review [ 10005 ]

Nowlan Freese made changes - 10/Aug/23 1:27 PM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Nowlan Freese made changes - 10/Aug/23 3:02 PM

Assignee

Nowlan Freese [ nfreese ]

Robert Reid [ robertreid ]

Nowlan Freese made changes - 10/Aug/23 3:02 PM

Status

First Level Review in Progress [ 10301 ]

To-Do [ 10305 ]

Robert Reid made changes - 15/Aug/23 9:06 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Ann Loraine made changes - 21/Aug/23 9:57 AM

Sprint

Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7 [ 172, 175, 176 ]

Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 172, 175, 176, 177 ]

Ann Loraine made changes - 21/Aug/23 9:57 AM

Rank

Ranked higher

Robert Reid made changes - 01/Sep/23 10:06 AM

Status

In Progress [ 3 ]

To-Do [ 10305 ]

Ann Loraine made changes - 04/Sep/23 9:24 PM

Sprint

Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 172, 175, 176, 177 ]

Testing 2 : 4 Nov - 15 Nov, Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 82, 172, 175, 176, 177 ]

Ann Loraine made changes - 04/Sep/23 9:24 PM

Rank

Ranked higher

Ann Loraine made changes - 05/Sep/23 10:26 AM

Sprint

Fall 1 - Sep 5, Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 82, 172, 175, 176, 177 ]

Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 172, 175, 176, 177 ]

Molly Davis made changes - 15/Nov/23 2:45 PM

Link

This issue relates to ~~IGBF-3498~~ [ ~~IGBF-3498~~ ]

Molly Davis made changes - 15/Nov/23 2:57 PM

Sprint

Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21 [ 172, 175, 176, 177 ]

Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 6 [ 172, 175, 176, 177, 182 ]

Ann Loraine made changes - 27/Nov/23 9:11 AM

Sprint

Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 6 [ 172, 175, 176, 177, 182 ]

Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 6, Fall 7 [ 172, 175, 176, 177, 182, 183 ]

Ann Loraine made changes - 27/Nov/23 9:11 AM

Rank

Ranked higher

Robert Reid made changes - 28/Nov/23 9:30 AM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Ann Loraine made changes - 11/Dec/23 9:44 AM

Sprint

Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 6, Fall 7 [ 172, 175, 176, 177, 182, 183 ]

Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 6, Fall 7, Fall 8 [ 172, 175, 176, 177, 182, 183, 184 ]

Ann Loraine made changes - 11/Dec/23 9:44 AM

Rank

Ranked higher

Robert Reid made changes - 13/Dec/23 9:48 AM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Robert Reid made changes - 13/Dec/23 9:48 AM

Assignee

Robert Reid [ robertreid ]

Molly Davis [ molly ]

Molly Davis made changes - 13/Dec/23 10:26 AM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Molly Davis made changes - 15/Dec/23 3:40 PM

Assignee

Molly Davis [ molly ]

Molly Davis made changes - 15/Dec/23 3:40 PM

Status

First Level Review in Progress [ 10301 ]

Ready for Pull Request [ 10304 ]

Molly Davis made changes - 15/Dec/23 3:40 PM

Assignee

Robert Reid [ robertreid ]

Ann Loraine made changes - 22/Dec/23 10:24 AM

Sprint

Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 6, Fall 7, Fall 8 [ 172, 175, 176, 177, 182, 183, 184 ]

Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 6, Fall 7, Spring 2 [ 172, 175, 176, 177, 182, 183, 186 ]

Molly Davis made changes - 16/Jan/24 9:49 AM

Sprint

Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 6, Fall 7, Spring 2 [ 172, 175, 176, 177, 182, 183, 186 ]

Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 6, Fall 7, Spring 1 [ 172, 175, 176, 177, 182, 183, 185 ]

Ann Loraine made changes - 20/Jan/24 4:45 PM

Sprint

Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 6, Fall 7, Spring 1 [ 172, 175, 176, 177, 182, 183, 185 ]

Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7, Summer 8 2023 Aug 21, Fall 6, Fall 7, Spring 1, Spring 2 [ 172, 175, 176, 177, 182, 183, 185, 186 ]

Ann Loraine made changes - 20/Jan/24 4:45 PM

Rank

Ranked higher

Robert Reid made changes - 02/Feb/24 9:51 AM

Status

Ready for Pull Request [ 10304 ]

Pull Request Submitted [ 10101 ]

Robert Reid made changes - 02/Feb/24 9:51 AM

Status

Pull Request Submitted [ 10101 ]

Reviewing Pull Request [ 10303 ]

Robert Reid made changes - 02/Feb/24 9:51 AM

Status

Reviewing Pull Request [ 10303 ]

Merged Needs Testing [ 10002 ]

Robert Reid made changes - 02/Feb/24 9:51 AM

Status

Merged Needs Testing [ 10002 ]

Post-merge Testing In Progress [ 10003 ]

Robert Reid made changes - 02/Feb/24 9:51 AM

Resolution		Done [ 10000 ]
Status	Post-merge Testing In Progress [ 10003 ]	Closed [ 6 ]

People

Assignee:

Robert Reid

Reporter:

Robert Reid

Votes:

0 Vote for this issue

Watchers:

4 Start watching this issue

Dates

Created:

14/Jun/23 1:21 PM

Updated:

02/Feb/24 9:51 AM

Resolved:

02/Feb/24 9:51 AM