Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Summer 4 2023 June 26
Description
Anthony Postiglione request:
"Hi Molly,
Thank you so much for your help with getting all of the RNA-Seq data visualized for us! I have just one more favor to ask of you when it comes to my thesis chapter, I need a brief explanation of how the RNA-Seq analysis was handled on your end. I am out of my depth here for sure, so would you mind adding some brief detail to the section I am pasting below? Thank you so much again!
Analysis of RNA Seq samples
PCA plots were generated by XXX, EdgeR was used to identify DE genes, Volcano plots were generated to show temperature effects within genotypes, and lists of DE genes were compared across genotypes..."
Email back a response or post in thesis document:
https://docs.google.com/document/d/1iJd3wUgBSY8lXlIdPls6_4TU0T2h5Ecb5twQkB7dFg0/edit
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link |
|
| Assignee | Molly Davis [ molly ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Molly Davis [ molly ] |
| Assignee | Molly Davis [ molly ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Molly Davis [ molly ] | Robert Reid [ robertreid ] |
| Assignee | Robert Reid [ robertreid ] | Molly Davis [ molly ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Molly Davis [ molly ] | Robert Reid [ robertreid ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Robert Reid [ robertreid ] | Molly Davis [ molly ] |