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  1. IGB
  2. IGBF-3375

Run Nextflow with 2021 Palanivelu Lab-generated samples

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Directory: /projects/tomato_genome/rnaseq/ravi-tamaulipas

          • Copy fastq files to /nobackup/tomato_genome/... location
          • Make csv
          • Run nf-core pipeline (SL4 & SL5 runs)

          Note: Check to make sure configuration is the same intron size as other tomato experiments

            Attachments

              Issue Links

              blocks

              Task - A task that needs to be done. IGBF-3376 Create scaled and junction files for 2021 Palanivelu Lab-generated samples

              • Major - Major loss of function.
              • Closed
              relates to

              Task - A task that needs to be done. IGBF-3377 Make 2021 Palanivelu to sample sheet

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3389 Edit XML script to include SL4, SL5 tomato genomes

              • Major - Major loss of function.
              • Closed

                Activity

                  People

                  • Assignee:
                    Mdavis4290 Molly Davis
                    Reporter:
                    Mdavis4290 Molly Davis
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                    Dates

                    • Created:
                      Updated:
                      Resolved: