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  1. IGB
  2. IGBF-3376

Create scaled and junction files for 2021 Palanivelu Lab-generated samples

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          • Rename "sorted"
          • Make Scaled files
          • Make junction files

          Notes:
          SL5 junctions 2bit file: S_lycopersicum_Jun_2022.2bit
          SL4 junctions 2bit file: S_lycopersicum_Sep_2019.2bit

            Attachments

              Issue Links

              blocks

              Task - A task that needs to be done. IGBF-3377 Make 2021 Palanivelu to sample sheet

              • Major - Major loss of function.
              • Closed
              is blocked by

              Task - A task that needs to be done. IGBF-3375 Run Nextflow with 2021 Palanivelu Lab-generated samples

              • Major - Major loss of function.
              • Closed
              relates to

              Task - A task that needs to be done. IGBF-3389 Edit XML script to include SL4, SL5 tomato genomes

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                Mdavis4290 Molly Davis created issue -
                Mdavis4290 Molly Davis made changes -
                Field Original Value New Value
                Epic Link IGBF-3251 [ 22132 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue is blocked by IGBF-3375 [ IGBF-3375 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue blocks IGBF-3377 [ IGBF-3377 ]
                Mdavis4290 Molly Davis made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Sprint Summer 4 2023 June 26 [ 173 ] Summer 4 2023 June 26, Summer 5 2023 July 10 [ 173, 174 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Description * Rename "sorted"
                * Make Scaled files
                * Make junction files                 		* Rename "sorted"
                * Make Scaled files
                * Make junction files

                Notes:
                SL5 junctions 2bit file: S_lycopersicum_Jun_2022.2bit
                SL4 junctions 2bit file: ???
                Mdavis4290 Molly Davis made changes -
                Description * Rename "sorted"
                * Make Scaled files
                * Make junction files

                Notes:
                SL5 junctions 2bit file: S_lycopersicum_Jun_2022.2bit
                SL4 junctions 2bit file: ???                 		* Rename "sorted"
                * Make Scaled files
                * Make junction files

                Notes:
                SL5 junctions 2bit file: S_lycopersicum_Jun_2022.2bit
                SL4 junctions 2bit file: S_lycopersicum_Sep_2019.2bit
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ] Molly Davis [ molly ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                nfreese Nowlan Freese made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                nfreese Nowlan Freese made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                nfreese Nowlan Freese made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3389 [ IGBF-3389 ]
                Mdavis4290 Molly Davis made changes -
                Summary Create scaled and junction files for 2021 Palanavelu Lab-generated samples Create scaled and junction files for 2021 Palanivelu Lab-generated samples

                  People

                  • Assignee:
                    Mdavis4290 Molly Davis
                    Reporter:
                    Mdavis4290 Molly Davis
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: