Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Summer 4 2023 June 26, Summer 6 2023 July 24, Summer 7 2023 Aug 7
Description
Original Directory: Directory: /projects/tomato_genome/rnaseq/ravi-tamaulipas
Nf-core run: /nobackup/tomato_genome/Ravi_tamaulipas_2021
Notes:
Study_name column: for the 2021 /projects/tomato_genome/rnaseq/ravi-tamaulipas data, study could be: "Tamaulipas [tissue type] RP Lab"
Make sure to review 'Tamaulipas-pistils-3hr-25C-R2' & 'Tamaulipas-pistils-0hr-25C-R2' for SL4 in IGB.
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-3251 [ 22132 ] |
| Description |
* Add files to KP_sample_sheet.xlsx
* Run "makeAnnotsXml.py" after merge |
* Add files to KP_sample_sheet.xlsx
* Run "makeAnnotsXml.py" after merge Notes: Study_name column: for the 2021 /projects/tomato_genome/rnaseq/ravi-tamaulipas data, study could be: "Tamaulipas [tissue type] RP Lab" |
| Sprint | Summer 4 2023 June 26 [ 173 ] | Summer 4 2023 June 26, Summer 5 2023 July 10 [ 173, 174 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Description |
* Add files to KP_sample_sheet.xlsx
* Run "makeAnnotsXml.py" after merge Notes: Study_name column: for the 2021 /projects/tomato_genome/rnaseq/ravi-tamaulipas data, study could be: "Tamaulipas [tissue type] RP Lab" |
* Add files to KP_sample_sheet.xlsx
* Run "makeAnnotsXml.py" after merge Notes: Study_name column: for the 2021 /projects/tomato_genome/rnaseq/ravi-tamaulipas data, study could be: "Tamaulipas [tissue type] RP Lab" Make sure to review 'Tamaulipas-pistils-3hr-25C-R2' & 'Tamaulipas-pistils-0hr-25C-R2' for SL4 in IGB. |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Description |
* Add files to KP_sample_sheet.xlsx
* Run "makeAnnotsXml.py" after merge Notes: Study_name column: for the 2021 /projects/tomato_genome/rnaseq/ravi-tamaulipas data, study could be: "Tamaulipas [tissue type] RP Lab" Make sure to review 'Tamaulipas-pistils-3hr-25C-R2' & 'Tamaulipas-pistils-0hr-25C-R2' for SL4 in IGB. |
* Add files to KP_sample_sheet.xlsx
Notes: Study_name column: for the 2021 /projects/tomato_genome/rnaseq/ravi-tamaulipas data, study could be: "Tamaulipas [tissue type] RP Lab" Make sure to review 'Tamaulipas-pistils-3hr-25C-R2' & 'Tamaulipas-pistils-0hr-25C-R2' for SL4 in IGB. |
| Summary | Add 2021 Palanavelu to sample sheet and run Xml file | Add 2021 Palanavelu to sample sheet |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Molly Davis [ molly ] |
| Assignee | Robert Reid [ robertreid ] |
| Sprint | Summer 4 2023 June 26, Summer 5 2023 July 10 [ 173, 174 ] | Summer 4 2023 June 26, Summer 6 2023 July 24 [ 173, 175 ] |
| Summary | Add 2021 Palanavelu to sample sheet | Add 2021 Palanivelu to sample sheet |
| Assignee | Robert Reid [ robertreid ] |
| Assignee | Robert Reid [ robertreid ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Robert Reid [ robertreid ] | Molly Davis [ molly ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Comment | [ *Branch*: https://bitbucket.org/mdavis4290/molly-pistil-rna-seq/branch/IGBF-3377 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Molly Davis [ molly ] |
| Assignee | Molly Davis [ molly ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Assignee | Molly Davis [ molly ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Assignee | Molly Davis [ molly ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Comment |
[ *Branch*: https://bitbucket.org/mdavis4290/molly-pistil-rna-seq/branch/IGBF-3377b
Note: Make it its own sample sheet. ] |
| Summary | Add 2021 Palanivelu to sample sheet | Make 2021 Palanivelu to sample sheet |
| Assignee | Molly Davis [ molly ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Description |
* Add files to KP_sample_sheet.xlsx
Notes: Study_name column: for the 2021 /projects/tomato_genome/rnaseq/ravi-tamaulipas data, study could be: "Tamaulipas [tissue type] RP Lab" Make sure to review 'Tamaulipas-pistils-3hr-25C-R2' & 'Tamaulipas-pistils-0hr-25C-R2' for SL4 in IGB. |
Original Directory:
Nf-core run: /nobackup/tomato_genome/Ravi_tamaulipas_2021 Notes: Study_name column: for the 2021 /projects/tomato_genome/rnaseq/ravi-tamaulipas data, study could be: "Tamaulipas [tissue type] RP Lab" Make sure to review 'Tamaulipas-pistils-3hr-25C-R2' & 'Tamaulipas-pistils-0hr-25C-R2' for SL4 in IGB. |
| Description |
Original Directory:
Nf-core run: /nobackup/tomato_genome/Ravi_tamaulipas_2021 Notes: Study_name column: for the 2021 /projects/tomato_genome/rnaseq/ravi-tamaulipas data, study could be: "Tamaulipas [tissue type] RP Lab" Make sure to review 'Tamaulipas-pistils-3hr-25C-R2' & 'Tamaulipas-pistils-0hr-25C-R2' for SL4 in IGB. |
*Original Directory*: Directory: /projects/tomato_genome/rnaseq/ravi-tamaulipas
*Nf-core run*: /nobackup/tomato_genome/Ravi_tamaulipas_2021 Notes: Study_name column: for the 2021 /projects/tomato_genome/rnaseq/ravi-tamaulipas data, study could be: "Tamaulipas [tissue type] RP Lab" Make sure to review 'Tamaulipas-pistils-3hr-25C-R2' & 'Tamaulipas-pistils-0hr-25C-R2' for SL4 in IGB. |
| Assignee | Ann Loraine [ aloraine ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Sprint | Summer 4 2023 June 26, Summer 6 2023 July 24 [ 173, 175 ] | Summer 4 2023 June 26, Summer 6 2023 July 24, Summer 7 2023 Aug 7 [ 173, 175, 176 ] |
| Rank | Ranked higher |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Assignee | Ann Loraine [ aloraine ] | Molly Davis [ molly ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |